RnoINT0077756 @ rn6
Intron Retention
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88648850-88651686:-
Coord C1 exon
chr10:88651610-88651686
Coord A exon
chr10:88649561-88651609
Coord C2 exon
chr10:88648850-88649560
Length
2049 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTGCTATATTTTCAACAGATT
3' ss Score
9.45
Exon sequences
Seq C1 exon
GCCCTAGGCTCAGCCGGGAACTGGCCACAGAGGCAGCAGAGGAGGTGAAGGAAAAGGTCTGCAGGCTGAACCAAGAG
Seq A exon
GTGAGTTTGGCTTGGCTCTTCCCCTCCGACCCCAGAGAATATTGTCTTGGGGTCTGAGAGGAGCATGTTGTGTTCTAGAGCTAGCCAGAGTCCTGTGATCTGTTAGTCATGCTAGCTAAATTACTCTGGGTAAGCCCCACAACTATGCTGGGCTTCCGTTTCCTCACTTAAAAGTTAGAAAAATGGTATGTCTGTCTGGGTGGTGATGGTGCACGCCTTTAATCCTAGCGCTCAGGAGGCAGAGGCAGGCAATGGCCGAGTCCAAGGTCTACAGAGTGAGTTTCAGGAGAGTTAGAGGGATAGATGGAGAAACTCAAAAAAACCAAACGATTGATTGAGAGGTAGATGATAGATAGAGAGATAGAGAGATAGAGAGATAGATAGATAGATAGACAGACAGATAATAGACAGACAGATGACAGATGAGAGAAAAATAGTATGTCCTCCCTAGAAGTGTGAGAATAAGAGTGCATACATATCTGGTCTGGGTCCTGCTGCATCTCGAATATTCACTAACACCTCTCCCTCTCACAACTAGGTCTCCATTTGCAGCCTGAGACCATCCAACCAAACACAAGTCTGATGCCCAAGGCTTAAGTCCTTTCCCTTTTAACCTTTACTCAGTCTTGGGAAATGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCACTTTTAGGCTTAGAGGGCCTATGCCCTTATGGCTGAATACTGGCCAGGAAGAGACCATATTCTATATACTTAGGCTAGGCACCGCCTCTACTCCTTCCCCAAGGGATCTCAGTACTGTCGCCACACAGCTACCAAACTCAACCCCTGGGAGACACCTTCCCTCAGTTCTAATAAACAGCCAGGAGCCCAGAGAGGCAGCATTTGAGCCAGAGCAGAGCCTAGAGCTATCTCCAGGTCAAGGTTAATGGCAAGTTCTGCTTCTGCTTCTCCTGACTGCCTTGGGCTGCCCTCAGCTCCAGGACAGTGCTTCCCATACCTGAATTTGTATCTGCACTGCCCCTTCACGTACAAGTTCCCTGGCTCCTATCAGTTTGGAATGTCTAGGGTGGGGTCAAGAACTCTGCATGTTGACAAGTTTCTCAATGGACTCAGCACTCATTAAAAAGCCACCCATGAAGACACTTAGGCGATGAGTTAAGAGCAATGCTGTGACTGCATTTTTTCCCCCTATATTTTATAAAAGGGAGGGGGAGCCAAGTGTAGTGGCTCATGCCTGTAACCCCGAAACTCCAGGGATAGAAGCAAGGAAGATCAAGAATCCAGGACCATCCTTGCCTACATGGCAGCCTGAGCTCTCTGAGACAGTCTCAGGGAGATGGCTTCACTGGTAAAGTGCCTGCCACATAGACATAAGGACCTGACTTCTGATCCCTAGTGCACACTGAAAGCCAGGCGTGGTGCTGCGTGTCTGTAACACTGGTGATGGGGAAGGGATTTGGACAGACACACGCCGGTCACCCAGTCTAGATGGTTGGTGAGCTCCAAGTTCAGTGAGAGGGCTCTGTCTCAGTCTTTCCCCCACCTGTCCTGGAACTCTATAGACCAGGTTAGCCTCAAATTCACAAAGACCCACCCGCCTCTGGGATTAAAAGTGTGTGCCACCATCATCCAGTGAGGCTTTGTCTTCAAACAAACAAACAAACAAAACTAAAACTAAACAAACAAACAAAACCATAGAGAATAAGAGGAAGTCATCCTGTGTTGACCTCTGGCCTAGGACATCTGCACTCAAGTGTACACACACACACACACACACACACACACACACACACGCATAAACACACATGCAGTGCACATACACACAAATATGTAAAAAGCCAGGGAGCGGGTGCAGCAGTGTCCGATGTCACAAATAACTTTCTGGAAATAAATTGGGGTACTCGTAGGCTATTATAGCTCCTGCTCTTTCTTCTTCCCAGGTGGTTGTGAACCGACAGTGTTGAAGGAAGTTGTAATCTGTAGTGTGGGGGATGAGGGGTGACCTGGTTATTGCTATGGTGTCCATGAGACATTTTGCTATATTTTCAACAG
Seq C2 exon
ATTTCCAGACTCAACCAGGAAGTGTCTCAGCTGAGCCGGGAGCTTCGCCAAGTGATGGGCCTCTTACAGGCCAGGCTGGGTCCCCCAAGTCACCCACCTGACTCCACTTGGCTCCCAGACCTTCCTTGTCCCCATCAGAGACCGCCATGCATCTCTCCTCATATGTCTGGACCTCCACCTGGTCTCCAGAATACTACACTTGCTGTAGTCCACTGTCCAGCCAGTGTTGGGACAGTGGAGATAGGGGCCACCCCCTCAGAGCTGAGGTCTTCCATGGTGCCACCCTTTCCCTCAGAACCTGATCCTCTTGGACCCTCTCCAGTGCCAGAGGCTTCTCCTCTGACCCCAAGCCTCCTGAAGCACAGCTTCCAGTCTGGGTCAGACACATTCCACTGACCCTGGCCTTGGGCCCAGGCCTGTCTGGGGTGGGCTTAATTACCTGCCATCCAGGGAGGAGCTGGGCTCCTTGGCCTCTTGCCTTGGGGTCAGCAGCTGCCAGCTGGTCTGGTTGGCTCTGGATTCTCTGGACTTTTTAACAATGAGTGGCCACATCTAACCCCGTTCCATTTTCTAAACCATCCCCCCCACCCGTCCTACTCTTGTGGGAGGGGAGTCACCTGAAGCCGTGGAATCCAGCAGGCATGAAATGGACCATGGTGCCTTGTTGGGCTACGCAGAGGAGATGTCTTACTTTCTCCCCACGACTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790:ENSRNOT00000025518:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]