HsaINT0084736 @ hg38
Intron Retention
Gene
ENSG00000162687 | KCNT2
Description
potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr1:196489838-196492341:-
Coord C1 exon
chr1:196492262-196492341
Coord A exon
chr1:196489938-196492261
Coord C2 exon
chr1:196489838-196489937
Length
2324 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTTTTATCATTTGTTTAAAGGTC
3' ss Score
8.26
Exon sequences
Seq C1 exon
GGTACAAGTTGAATTCTATATGAATGAAAATACATTTAAAGAAAGACTAAAATTATTTTTCATAAAAAACCAGAGATCAA
Seq A exon
GTAAGTTATTCATTTCATTCCCCTCTGTTCGTACATATATTTACTTCAAAATATTTCAACTGTGTGATCTTTTGCAAAATACTTTTTAGATAGAGGAATAAAATTGGTTATTTTTTCCAGCAGGTGGTAGAGGAATAAAATTGGTTATTTTTTCCAGCAGGTGGTAACATTTTAGAAAAGTATAGGCACTACATATAGTGATATTAATGCTTCTTGAACATCTTCAATTCTCCAAATTCCATGTTAATAAGTAGACTTCTGAGTGGACTATCTGGATTAGTATAAACATTGAGGAAAATAATTTAAATGAGGGTCCTTCCATTTTAACTCTAAATATCGTATTTTCAAAAAGCTCTGACAGACCACAATGGGAAACAATTGTCTGATTTAGGGAAGGGAACGTTTAATATTTCCTAATCATTCCAAATAATAAGAAACATCTAGGTTGCACTGAAATATACAGATTCCTATCTTTCTTAGCCTAGAGATTTTGAGCCAGGAAGTGTAGGGTAGATCTCAGAGTTTAACATCCCAGTGATTCCTATCATCAGACAAATGTAAGAAAGTAACAAAGTAGAACTTCAAGAATACAAAATTGGCATAGTAACTGTCCTCCTGAGCCTATTCAAGGTTAGGAGTGCCGCTGATGCTTGTTGCTTCCCACAATGCCATATATGTTTAAAAAGCCATATGTAATAAACCAATATGCAATTTTTTTTATGGTCATTGCTTACAATGTCACAGGGAATGGAGAGGCCTGCATTAGTTGGTGTAGACATTAAGCTCTGTGAATTTTAACCTCCAAATCCTCTTGTCAAAATTAAGTTGTGCCTCTGTAGGTAGGATTCAAAGAGAGAAGCTTGACTTGTGGGAAGTTGTCCAAATACTGATGATATGGAATATTTCAATATTTAAGTCATACTGCTCAGATAGTCTTAATGACAGGCTGGCCTCAAGGTTAAGACTGTTAGCAACTAATGTTTTTCTAACATGGTTGTTCAGAATATCCAAGGAAGCCCCATAAATAGATATTACCTAAAGGGGTCACATCATCTGAATAGTTTCCCTTATTTCAGTACTAACAGTCCTATCTTTCCAGGCCAAAAAAGGTGGATGCATTGTTTGAATACTTCACCCATAGTCAGCTGCAACTAAGCAGTTATTTGAGGAGGCCCATTTCTATAAAACCAGCATAATTTCTTTAATAATTTGAAAGATTTTTTAAGGAAGTGAACCCATAAAATGTATTCAGCATTTTAATTGGAAAACCTTGGAAAAATTTCACAAATGATAAGCATCGACCTTTTTACTGGTAAGAACTGTTACCACAAGTACACTCACAACAGCAGAGTAGGACAAAAAAAGTGACATTTCATTTCTAGATTTTATTAAGTAATAATTATAGGAAGGCCTTTATCAAAATTTTATTCATAATGCATGAATCAGATATCGTAAAGTAATTACAGGAAAGATAATGCTCATATTAATCAGACTTTATGCATATTGTGCTTAATCTTAAATACTCTTCATCATCATTGAATATTACAGGCTGCATAATTGTGACCCACACAGTTTAGAAGATACATACATGGCAGTTTTAATTCCCACAAAAGTTTAAGATTCCATGGGTATTTTAAATAGTTAAAAATAGAATTTAATTTATTGAACTTTAAACGTATGTGTGTGTATGTGAGAGAAATGGAGAGATTGATCGTGTGTGTGTTTCTCAGTGTATGCTATTAAGATTTCTCTATACTTATATAATATATATTATTATATAATGAATAAATAATATATATAATTATATAATTGGAATGTATTATAATTATATAGTTAATATTAAATATACAACATAGAACTATACAAATATAATTAATTTCTTTATAATCAAATCTACAAGATTCTGTGAAGGTATAAGTTTTATAACTTGGCTTGTGAATTTGTAAGCAGCTAGATTTTCTAGCCAAAGTTTATCCCAAAATTTATGGATGTATAAAATGCTTAAACATATAAACATACTTTAATCAACCTCGATTGGACACAAATTTTGTGGCTTCTGAATGTTCAAATCTAGATTTAGTCTTTTTATAAAATATGCACTCTCATTTGCAGTTCAAGTATTCTGTCAAACTCACTTTTTGTTTCAATATTCAGGTAATTAAAATTCAGCCACCAAGAACTTCAGAGAGTTTAGACAATTATAGTAGTGCAGCTTCTAAATACAATTTAAGTGCTGTATTTAAATTTGATATTTTTGACAATTCTTTTTAGTCTTTTGTGAACTAAGTTCAGATGAAAATCAAACTTTTATCATTTGTTTAAAG
Seq C2 exon
GTCTAAGGATACGCCTGTTCAATTTTTCTCTCAAATTACTAAGCTGCTTATTATACATAATCCGAGTACTACTAGAAAACCCTTCACAAGGAAATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687:ENST00000294725:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development