MmuINT0085851 @ mm10
Intron Retention
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140351208-140354553:+
Coord C1 exon
chr1:140351208-140351287
Coord A exon
chr1:140351288-140354453
Coord C2 exon
chr1:140354454-140354553
Length
3166 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTGTTGTTTGCTTAAAGGTC
3' ss Score
8.71
Exon sequences
Seq C1 exon
GGTCCAAGTTGAATTCTACATGAACGAAAACACATTTAAAGAGAGATTAAAACTGTTTTTCATAAAAAACCAGCGATCAA
Seq A exon
GTAAGTTGTTCCCATCACTGGCTCTTTGCATAGAAATCTACCTCAAAATTCCAGCAGCATAATATTTCATAAAAAACGTCTGCATAATAGAATAAAATAGGGATAGTATTTATTGGGAAGTAAATGTAAAACAAAACAAAACAACAAAAAGAAAACTGAAGATGCTACATCCAGTAGTTTACATGTCTCTTCAATATTTTAAGTCTCAAGATCTCACAAGAGCCAGTAGAGACTTGTGTATCCTATTTGAGTTCTGAAAAATATTAAAGAAATTAGTTTAAGGAGAGCACAAGTTTAATTTCTTTACTAAGGCAGAAGGAACAGAATGCCAAGGTCATGGATAAAGGTACATGGGGGAGGGGGTCAGAAGTTTTGTATCTCCATAAGTAGCTATTGGCAGTTATGGGTTGCTGGGCATAGGGATGTCATTTTGTTCAGTGGTGTAGTCACTGGGTGATGGTCATGCTCCAGTAAATAACCCTTGACCCCTACTCAAATTTGCAATCCCAATTAATCTCAGTGAGTTTTGAAACAAAACAGGATATGAAAATAGGAGGGGATCTCGTGAGGAAGCAGAAGTAGTAAATCAGGAGTGGGAGAGGAAATGAGAGGATAATTGGGGTGAAGATGATGGTAATACATCATATGCTTTCATAAAACAATATATTGTAATATGTCATGGTCATCTCTGCTAACAAAGAGAGTTTGAGGATAGCTTACACAACTGAGTAACTACCAAGCAACCCCGGATTATTGAGTAAAGACTTGTCTCCAAAACTTCCCTTCCCTTCCGTTGTCTCCAAAAACGACAACAACACCCACAATTTTTTTCCCATTTTTATTAGGTATTTACCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCATCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTTTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTTCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTATGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATGTTGCTAGTATATGCAATGAACACCCACAATTTAATTGAGTGTTTTAAATGTGAAGGTTGTTTAAACTGTCATTGTTTGTCAATGTTTCCTAATCAGTCCTGATGATAATCAATATTAAATGTAGCCTGAAGTATAAGGATGGGTGTTGCTCTTTCTAAGAAGACTTTACATTAGTAAGTATAGGGTGAGTGTCAAGTTTAACATGTTATAGCTGTCTCCTGAGAGGCTCTGCTAGAGCCTGACAAACACAGGGGTGGTAAGATTTTCTCAGTAGTAGACTAGCTTCAGCATTAAAGTTGAGAAGATCAATGCCTTCCTACCTGTATTTACAGGGAAGCCCCATCAGTAGATGTTACACAAAGGGGGCTAAATCCTCTGAGTGATGATGCTATTAATCACAGTGTTAGGACAATCATTGAATACTCACCTGACTAAAGAGGAGACCCTTCTTTATGAAACTGTAAGCTCTATGGTTAAATAAGTCCTTTCAACCTTGTGGTGTCTCGGTTCAGAATGTTTTATTTTGATGAAAGAGATGAATTTAGAGCACAAAAATCCCTCAGTACTTCAATTTGGAAACCAAGAAATGATTGCACGTTAAAAAAATTACTATTAAAGACTGCTATAAATACACTCCACAAAAAAGTAGTGTAAAAAGGTGACACTTCATTCTAGATTCCATCAAGTAATAATTATTGAAAGGCTTTTCTTGCAATTTTATGCAAAAAACACAAAGCACATACCACTGATTACAAGCATGACAGTGTTTCTGTTAATCAATGTAGTTGACCTTCGTTAGCCTTCTTTATCAGGCACCATGTTTCTCCCAACCATGACCTAAGTGCTTTGTATGGTATATGCATGTTACTCTTGATTTTCAAAAAATTTAAGATTCCAGTGGTCCTTCAACCTGTTTTCTTTTTAAATTAGGTATTTTCCTCATTTACATTTCCAATGTTATCCCTAAAGTCCCCCATACCCTCCGCCCCACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTATAGTCAAGAGCTCCGGGGAACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTATTTTCTCTAGCTCCTCCATTGGGGGCCTTGTGAACCATCCAATAGCTGACTGTGAGCATCCACTTATTTGTTAAACCTGGTTTTTAAGAACTTCAATTTTCCCACTTCAGTACGAAACAGAATTTTTTTTCTATTCATGTACTTATCAGTACAAACTATTATGACTTCTCATGGTAAATGATGACATAATTATTATATAAACATGTAATTATAGAGATGATATATGTCATAATATAAATATAATAGGAACATTATCACAGGTAATTATTTAAACATGTTTTCTCTCTTATCAAATCAACAAAGTGCTTCAGAGTCATAAGGATGTATTACACGCAAGATGGGGGCAACTCGATTTTTGAGCTAGTTAAAGTTATTTCCCAAGTATTTATTAAAGTACGGACAGACTTGAACCAACCTTGACATGATGTAAATTTTGTGGCTTTTGACTTTTAAAACCCAGTTCTCTCACTTGTTGAATGTTCTCTGTCATTTATGGCTCATGAATTCTATGCCATTCACATTTTATTTTAGGAGAGGTTGTTATTAAAATTCAGCTACCAAGAACTTCAGTAAGTTTAGAAAATTATAACATGTGCTTTCTAAATACCTTCTAAGTGCTGAACTGAAAGATAATATTTTTGACAATTCTCTCTTTCTCTTTCATGCACCATATTGAAATGAAACCTAACTTTTTGTTGTTTGCTTAAAG
Seq C2 exon
GTCTAAGAATCCGCTTGTTCAACTTTTCCCTGAAGTTGTTAAGCTGCTTATTATATATTATCCGTGTGTTGCTTGAGAAACCGTCACAGGGAAGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726:ENSMUST00000120796:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types