HsaINT0084741 @ hg38
Intron Retention
Gene
ENSG00000162687 | KCNT2
Description
potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr1:196280860-196282356:-
Coord C1 exon
chr1:196282273-196282356
Coord A exon
chr1:196280989-196282272
Coord C2 exon
chr1:196280860-196280988
Length
1284 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
ATAATTTGTGTGTGTTATAGATG
3' ss Score
9.03
Exon sequences
Seq C1 exon
TCATTTGTGAAGGATTATATGATTTCTATCACGAGACTTCTGTTGGGACTGGACACTACACCAGGATCTGGGTTTCTTTGTTCT
Seq A exon
GTAAGTTAATAATCTCTAGAATAAAAGATAGTTGTGATAGAAGGTTCTGAAATCTATCTACCGTGTACTTTGCTAATTCTTCTATGTCATGTGTTATTTTTTGTATTGTGAATCCAGATGCATTTGAGTTTTTAAAATTCCTTTAAAAATTTCAAGGAAAACATATTATTTTTACTTAATAATCATAATAAATAGCCATTTTGTGTAAAATGCTGAATGAATTTGGCCAGGCGTGGAGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGTTAGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGCGGGCCCCTGTAGTCCCAGCTACTCGGGAGGCTGAGAATGGCGTGAACCCAGGGGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCCATCTCAAAAAAAAAAAAAATGTTGAATGAATTTTTTTTTGTTAACTGGCAATTTGAAACTGCCGTAGGATACTATACTGTCCACAAAAACGGTGATCATGCTTTTTAACTCCTTTGTTTTATAGATAAGTATACTTTGTCCAAGTATGCTGAATGAAATGATTTGGTAACAGTTCAGATTTACAAGAAGCAAAGGGGCACTACAATTTTTGTTTCCTGTCTGGTATCACGATGCTTATTCTACTATTCATCTTTCTCAATATAGGCATTATTGGAACATTGGGTGGAACAAGTCAGTATGGTGCTAGAGTGTCTTTTGCACTTCGCATTTGGTAACATCAGCATACCCTGTACATTAAATACCAGTGTCAGCCTCCAGTTATTGCAGCATGCAAAATAGTTTCCATATGCTTTACATTTCCCAGTCAATTACCAGTGCTCTATTGCCTACTGATAACGAACTAATATAATGTCATACTGCCCTAAATTGAGTACTCGGATTTCTTAAGTTTGGTGATGCATAATAAATAAATTTAATACATGGATAAGCATGAAATATTACTTGGAGATTTCCAAATACTAATAATTTCTCCCTTTAAGAAGTGAAAAATGCTTCAGCCAGGGATGTCGGTTGAGTCTGCAGTGAGCCATGGTTGCACCGTTGCACTGTAGCCTGGGTGACAGAGTGAGACCCTGCCCCCCACAAAAATAAGCAAATAAAGAAATGTAAAGTTACCACTAGGTTTTTATTTCTGACACATTTAATATGTAAATAATTTGTGTGTGTTATAG
Seq C2 exon
ATGAAAATCACTGCAGATGACTTATGGATCAGAACTTATGCCAGACTTTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATTGGAATCTACAGGACTGAGTCTCAGAAACTTACTACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687:ENST00000294725:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTATCACGAGACTTCTGTTGGG
R:
CTCAGATGTAGTAAGTTTCTGAGACT
Band lengths:
190-1474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development