RnoINT0078086 @ rn6
Intron Retention
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57469391-57470637:+
Coord C1 exon
chr13:57469391-57469474
Coord A exon
chr13:57469475-57470508
Coord C2 exon
chr13:57470509-57470637
Length
1034 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTCATTCATATGCATTATAGATG
3' ss Score
5.78
Exon sequences
Seq C1 exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
Seq A exon
GTAAGTTAATCGTGTCTGGAAGAGGACAGAATTCTGATAGAAGGTTTGATTGGAGCACCTACCATGTGCTTTTGGTGACTTGTTTATAACCAAATTTATTTACTCATGTTTGTCTAAAATGTTGATCTGAGATTTTTTTCTAATTCATTAGGTCCTTATATTGTATGGTTTCTTTGTGGCTCAAGCATTACAATTAAATTGTTACAGAAAACGTTCTATATAAAACCAAACAAAGGTTCTCATTGTTAATGTTGTTTTCATTATGAGTTTGACAATGAGAAGTCCAAGTCTTGGATGCTACACTGTCCATGAGCATAATAATTTTGGCATTCAACCCTGTATCTTTCTGAGACAGGGTCCTGTTACATTCTTCTGACTCTCTTAGTATTCTGGAATCAAGGAATACTCCACTAAAGTCTTTTCAAATTTTAGTGAGACTAGGCCTGTGGTATTGTACCTGGTTCAAACAAGCTATTTTGTAGAAGTGTGTAATAAGTAGAATACTGGTTCAAGATACACAAGAACCTGTGTGGGAGAAGAACCTTGGCTTCCTGCCTGGAACTCTGTGCTCCTTCTACAAAAACTTTGCTTCTGTACATGTAGGAACACTGGGGCAAGTGAATAGGACCTTTATTATTAGAATAGATTCTGCACCTTGCTATTTTTTCTTTTTTGCTTTATATTCTCTATTCCCTAAATTTCCACATCAGTTGTGCTATTACATTATCTTGAAGGTTTTCAAAGTTGACAGATTTCCCAGATCTCTGCCAGTGTTTTTTTGCCTACTTTTACTGGATCAATATAATGCTACACTGGCCCAGATTGAATACTTAACGTTTCGTGGCTTTGGATGAGTTCTCAGGATAAGCTGAGATAGAGTAAAATAAATAAACATAATAAGTGAATTAGGTTTTATGAAATACTACTTTGAGATTTCAAAATGTATATTGAGGGGGTTTTTAAGAAGAGAAAAATGATCACTGGGGTTTTTATTCTTAAACATTGATTGTGTGATTCATTCATATGCATTATAG
Seq C2 exon
ATGAAAATTACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCTACAGAACAGAATCTCAGAAGCTAACTACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312:ENSRNOT00000017884:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTATCACCAGACTTCTTTTGGGAC
R:
CTCAGATGTAGTTAGCTTCTGAGA
Band lengths:
190-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]