HsaINT0087324 @ hg19
Intron Retention
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139700956-139701319:+
Coord C1 exon
chr9:139700956-139701124
Coord A exon
chr9:139701125-139701208
Coord C2 exon
chr9:139701209-139701319
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACCCTCCTCCCGGCCTACAGAGA
3' ss Score
7.39
Exon sequences
Seq C1 exon
CTTCAAGTCCGTTGAGAAGAAAATGACAGACATGCTAAAAGAGGAAGAAGAGAGGCTCCAGCTGGCGCACAGCAACATGACCAAGGGCCAGGAGCTGCTGCTGACCATCCAGATGGGCATCGACAACCTCTATGTCCGGCTGATGGGCATTAACTTGCCTGCGACCCAG
Seq A exon
GTACCGGGAGTGAGGCTGAGCTGCCACACACCAGGTCCCTGGGCAGGGCCAGAGGGGAGATGAGACCCTCCTCCCGGCCTACAG
Seq C2 exon
AGAGAAGTGGTGCTCTCCAACACCCTCGATTTGAACAGCAAGCTGGCGTACTGCGAGGGGAAGCTCACGTACCTGGCTGACAGAGTGCAGATGGTGTCCAGGACCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-KIAA1984:NM_001039374:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGACCATCCAGATG
R:
CATCTGCACTCTGTCAGCCAG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)