HsaINT0087324 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:136806078-136806867:+
Coord C1 exon
chr9:136806078-136806672
Coord A exon
chr9:136806673-136806756
Coord C2 exon
chr9:136806757-136806867
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACCCTCCTCCCGGCCTACAGAGA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GACATCACTAGCCGCTTCCTGGCCCAGAGGAACACGGAGGAGAACCTGGAGCTGCAGATGGAGGACTGTGAGGAGTGGCGGGTGCAGCTGAAGGCCCTGGTGAAGCAGCTGGAGCTGGAGGAGGCCGTGCTCAAGTTCCGCCAGAAGCCTAGCTCCATCAGGTGCCCCGGGCTTCCGGGGCTGCGGGCCACCCACCCCAGTCTCACAAAGGCCCCGGGCTGCAGCCAGGCTGGGAGCTGGGAGTATACCCACTGCCAACAAGCCTGTGTGTCCCACAGAGGGGCCAGGGGACTCCACTTGCACACACCTGAGCTTCTGAGTCCCTGATTCTGGCACAGCACCCAACTCAGGACTGGGCTCCTGGGTGGCCCACCATGGCTCTCGGGCCTGTGCCCCTCACTGCTGTGTCCCTATTGCCTTCTGCAGCTTCAAGTCCGTTGAGAAGAAAATGACAGACATGCTAAAAGAGGAAGAAGAGAGGCTCCAGCTGGCGCACAGCAACATGACCAAGGGCCAGGAGCTGCTGCTGACCATCCAGATGGGCATCGACAACCTCTATGTCCGGCTGATGGGCATTAACTTGCCTGCGACCCAG
Seq A exon
GTACCGGGAGTGAGGCTGAGCTGCCACACACCAGGTCCCTGGGCAGGGCCAGAGGGGAGATGAGACCCTCCTCCCGGCCTACAG
Seq C2 exon
AGAGAAGTGGTGCTCTCCAACACCCTCGATTTGAACAGCAAGCTGGCGTACTGCGAGGGGAAGCTCACGTACCTGGCTGACAGAGTGCAGATGGTGTCCAGGACCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273066:ENST00000415992:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGACCATCCAGATG
R:
CATCTGCACTCTGTCAGCCAG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development