BtaINT0081412 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106365082-106365446:-
Coord C1 exon
chr11:106365278-106365446
Coord A exon
chr11:106365193-106365277
Coord C2 exon
chr11:106365082-106365192
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CTGGTTCCTCCCCGCTACAGAAG
3' ss Score
7.22
Exon sequences
Seq C1 exon
CTTTAAGTCTGTTGAGAAGAAAATGAACGATATGCTGAAGGAGGAGGAAGAGCGGCTGCAGCTGGCTCACAGCAAGATGACCAAGAGTCAGAAGCTGCTGCTGACCATCCAGACCGGCATCGACAACCTCTACATCCGCCTGATTGGCATTCCCCTACCCACAGGCCAG
Seq A exon
GTACCAGCGGAGCCGGGAGGAGCCCCCAGCACAGAGGGTCCCTGGGAGGGGCCAGGGCGAGACAACTGGTTCCTCCCCGCTACAG
Seq C2 exon
AAGGAAGCAGTGCCCTCGACCACCCTGGACATGTACAGCAAGCTGGCGTACTGCGAGGGCAGGCTGCTGTACCTGGCCGACCGAGTGCAGATGCTGGCCGAAACGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGGAGGAGGAAGAGC
R:
TACATGTCCAGGGTGGTCGAG
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development