BtaEX0019335 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106364917-106365446:-
Coord C1 exon
chr11:106365278-106365446
Coord A exon
chr11:106365082-106365192
Coord C2 exon
chr11:106364917-106365013
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCCTCCCCGCTACAGAAG
3' ss Score
7.22
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
CTTTAAGTCTGTTGAGAAGAAAATGAACGATATGCTGAAGGAGGAGGAAGAGCGGCTGCAGCTGGCTCACAGCAAGATGACCAAGAGTCAGAAGCTGCTGCTGACCATCCAGACCGGCATCGACAACCTCTACATCCGCCTGATTGGCATTCCCCTACCCACAGGCCAG
Seq A exon
AAGGAAGCAGTGCCCTCGACCACCCTGGACATGTACAGCAAGCTGGCGTACTGCGAGGGCAGGCTGCTGTACCTGGCCGACCGAGTGCAGATGCTGGCCGAAACGGAGGAG
Seq C2 exon
GTCAGCACCAAGGTGAGGGATGTGTTGGAGTCCTCCACCCTGAGGGAGAAGCAGAACACCAGGATCAGCTTTGAGGAGACGGAGGAGGATGTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.081 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACGATATGCTGAAGGAGGA
R:
ATGACATCCTCCTCCGTCTCC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development