MmuEX6099607 @ mm10
Exon Skipping
Gene
ENSMUSG00000026940 | Ccdc183
Description
coiled-coil domain containing 183 [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25609260-25609793:-
Coord C1 exon
chr2:25609625-25609793
Coord A exon
chr2:25609431-25609541
Coord C2 exon
chr2:25609260-25609356
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCCTCTGACCCACAGAAA
3' ss Score
7.67
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTTTAACTCTATCCAGAAGAAGATGAAGAACATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCATCCAGACAGGTATTGACAACCTCTACATCCGGCTCATCGGCATCACCTTGCCAACCTTCCAG
Seq A exon
AAAGAAATAGCAGTCTCTAACACTCTTGATGTGTACGGCAAGCTGGATTATTGTGAGGGAAAGCTTATCTACCTGGCTGAGCGCATGCAAACGTTGTCCAGAAATGAGGAG
Seq C2 exon
GTTGACACAAAGGTGAGGGACACCTTGGAGTCATCAACTCTAAAAGAGAAACATAATACCAGAATTACCTTTGAGGACCCAGAGGAGGACATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-'18-23,'18-21,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.081 C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGAAGATGAAGAACATGCT
R:
CTCCTCTGGGTCCTCAAAGGT
Band lengths:
245-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types