MmuEX6099607 @ mm9
Exon Skipping
Gene
ENSMUSG00000026940 | 4921530D09Rik
Description
RIKEN cDNA 4921530D09 gene [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25464780-25465313:-
Coord C1 exon
chr2:25465145-25465313
Coord A exon
chr2:25464951-25465061
Coord C2 exon
chr2:25464780-25464876
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCCTCTGACCCACAGAAA
3' ss Score
7.67
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTTTAACTCTATCCAGAAGAAGATGAAGAACATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCATCCAGACAGGTATTGACAACCTCTACATCCGGCTCATCGGCATCACCTTGCCAACCTTCCAG
Seq A exon
AAAGAAATAGCAGTCTCTAACACTCTTGATGTGTACGGCAAGCTGGATTATTGTGAGGGAAAGCTTATCTACCTGGCTGAGCGCATGCAAACGTTGTCCAGAAATGAGGAG
Seq C2 exon
GTTGACACAAAGGTGAGGGACACCTTGGAGTCATCAACTCTAAAAGAGAAACATAATACCAGAATTACCTTTGAGGACCCAGAGGAGGACATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.081 C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGAAGATGAAGAACATGCT
R:
CTCCTCTGGGTCCTCAAAGGT
Band lengths:
245-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: