HsaEX6064081 @ hg19
Exon Skipping
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139700956-139701518:+
Coord C1 exon
chr9:139700956-139701124
Coord A exon
chr9:139701209-139701319
Coord C2 exon
chr9:139701422-139701518
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACCCTCCTCCCGGCCTACAGAGA
3' ss Score
7.39
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
CTTCAAGTCCGTTGAGAAGAAAATGACAGACATGCTAAAAGAGGAAGAAGAGAGGCTCCAGCTGGCGCACAGCAACATGACCAAGGGCCAGGAGCTGCTGCTGACCATCCAGATGGGCATCGACAACCTCTATGTCCGGCTGATGGGCATTAACTTGCCTGCGACCCAG
Seq A exon
AGAGAAGTGGTGCTCTCCAACACCCTCGATTTGAACAGCAAGCTGGCGTACTGCGAGGGGAAGCTCACGTACCTGGCTGACAGAGTGCAGATGGTGTCCAGGACCGAGGAG
Seq C2 exon
GGCGACACAAAGGTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTACAACACCAGGATCAGCTTTGAGAACCGGGAGGAGGATATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-'11-19,'11-17,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.081 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTTGAGAAGAAAATGACAGACA
R:
CCCGGTTCTCAAAGCTGATCC
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)