RnoEX6015901 @ rn6
Exon Skipping
Gene
ENSRNOG00000017044 | Ccdc183
Description
coiled-coil domain containing 183 [Source:RGD Symbol;Acc:1560370]
Coordinates
chr3:2833644-2834177:-
Coord C1 exon
chr3:2834009-2834177
Coord A exon
chr3:2833815-2833925
Coord C2 exon
chr3:2833644-2833740
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCCTCTGGCTTACAGAAA
3' ss Score
6.93
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTTTAGTTCTCTCCAGAAGAAGATGAAGAACATGCTAGAGGAGGAAGAAGCAAGGCTCCGTCAGGTCCAGAACAACATGAACAAGAGCCAGCAGCTGCTGCTGGTCATCCAGACAGGTATTGACAACCTCTACATCCGGCTTATCGGCATCGCCCCGCAAGCCTTCCAG
Seq A exon
AAAGAAATCGCGGTATCTGACACTCTTGATGTGTATGGCAAACTGGATTATTGTGAGGGCAAGCTCATGTACCTGGCTGAGCGCACGCAAGCGCTGTCCAGAAATGAGGAG
Seq C2 exon
GTTGACACAAAAGTGAGGGATTCCTTGGAGTCATCAACTCTAAAGGAGAAACATAATACCAGAATTACCTTTGAGGACCAAGAGGAGGACATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017044-'15-19,'15-18,16-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.081 C2=0.576
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAAGAACATGCTAGAGGAGGA
R:
TCATGTCCTCCTCTTGGTCCT
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]