GgaEX7009914 @ galGal4
Exon Skipping
Gene
ENSGALG00000001095 | CCDC183
Description
coiled-coil domain containing 183 [Source:HGNC Symbol;Acc:HGNC:28236]
Coordinates
chr19:832350-833296:-
Coord C1 exon
chr19:833131-833296
Coord A exon
chr19:832658-832783
Coord C2 exon
chr19:832350-832434
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTCTCTCCTCACAGGAT
3' ss Score
13.4
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
CTGCAGGAAGCTGGAGGCAGAGCTGCGGGTGCGCCTGCAGCAGGAGGAGGCCCGGCTGGAGCAGGCACGAGCCCAGTATGTGAGCAACCAGGAGCTGCTGCTGCAGTTTGAGAATGGCATCGACAACCTCGTCATCCGTCTGCATGGCATCAACGTGCCTGAGCAG
Seq A exon
GATGTCTCCGTTGAGTTCAAAGGGGTGGATGAGAAGCTGCAGTACTGCAGGCAGAAGCTGCAGCACCTGGCCCAGCGCGTGGCCTCCCTGCCTGCTCACACCTACAGCCCCGACGAGGACAACGAG
Seq C2 exon
GTCAGGAATTTAATGGAGAAAACGACTGCAAGAGAGCCGTGGAACCTGAAGATTCCCTTGGAGGACATAGGATCTGGGGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001095-'10-16,'10-14,11-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGGAGGCAGAGCTG
R:
GCACCCCAGATCCTATGTCCT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]