BtaINT0081413 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106364917-106365192:-
Coord C1 exon
chr11:106365082-106365192
Coord A exon
chr11:106365014-106365081
Coord C2 exon
chr11:106364917-106365013
Length
68 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
3' ss Seq
ACCGGCCCCGTGCCCTGCAGGTC
3' ss Score
10.23
Exon sequences
Seq C1 exon
AAGGAAGCAGTGCCCTCGACCACCCTGGACATGTACAGCAAGCTGGCGTACTGCGAGGGCAGGCTGCTGTACCTGGCCGACCGAGTGCAGATGCTGGCCGAAACGGAGGAG
Seq A exon
GTAGCCCTGGGCCAGGGGTGCCTGCACGCCCCACCTGCCCCAAGGCTCACCGGCCCCGTGCCCTGCAG
Seq C2 exon
GTCAGCACCAAGGTGAGGGATGTGTTGGAGTCCTCCACCCTGAGGGAGAAGCAGAACACCAGGATCAGCTTTGAGGAGACGGAGGAGGATGTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGACATGTACAGCAAGC
R:
GACATCCTCCTCCGTCTCCTC
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development