HsaINT0087325 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:136806785-136807066:+
Coord C1 exon
chr9:136806785-136806867
Coord A exon
chr9:136806868-136806969
Coord C2 exon
chr9:136806970-136807066
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
3' ss Seq
AAGGGGGCTTTGCCCTGCAGGGC
3' ss Score
6.56
Exon sequences
Seq C1 exon
ATTTGAACAGCAAGCTGGCGTACTGCGAGGGGAAGCTCACGTACCTGGCTGACAGAGTGCAGATGGTGTCCAGGACCGAGGAG
Seq A exon
GTAGCCCCGGGCTGGGAGGAACCTGCACAGCCCACGTCCCCTCAAAGCTGACAGGCTCCCGTTCAGAGTGTCTGCACGGCTGAAGGGGGCTTTGCCCTGCAG
Seq C2 exon
GGCGACACAAAGGTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTACAACACCAGGATCAGCTTTGAGAACCGGGAGGAGGATATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213:ENST00000484858:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGCTGGCGTACTGC
R:
CGATCATATCCTCCTCCCGGT
Band lengths:
173-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development