HsaINT0087325 @ hg19
Intron Retention
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139701209-139701518:+
Coord C1 exon
chr9:139701209-139701319
Coord A exon
chr9:139701320-139701421
Coord C2 exon
chr9:139701422-139701518
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
3' ss Seq
AAGGGGGCTTTGCCCTGCAGGGC
3' ss Score
6.56
Exon sequences
Seq C1 exon
AGAGAAGTGGTGCTCTCCAACACCCTCGATTTGAACAGCAAGCTGGCGTACTGCGAGGGGAAGCTCACGTACCTGGCTGACAGAGTGCAGATGGTGTCCAGGACCGAGGAG
Seq A exon
GTAGCCCCGGGCTGGGAGGAACCTGCACAGCCCACGTCCCCTCAAAGCTGACAGGCTCCCGTTCAGAGTGTCTGCACGGCTGAAGGGGGCTTTGCCCTGCAG
Seq C2 exon
GGCGACACAAAGGTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTACAACACCAGGATCAGCTTTGAGAACCGGGAGGAGGATATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-KIAA1984:NM_001039374:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGTGGTGCTCTCCAACA
R:
CGATCATATCCTCCTCCCGGT
Band lengths:
207-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)