HsaINT0088108 @ hg38
Intron Retention
Gene
ENSG00000155980 | KIF5A
Description
kinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]
Coordinates
chr12:57583101-57586632:+
Coord C1 exon
chr12:57583101-57583215
Coord A exon
chr12:57583216-57584217
Coord C2 exon
chr12:57584218-57586632
Length
1002 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
TCTTTCTCTTTCTTTCCCAGTTT
3' ss Score
10.91
Exon sequences
Seq C1 exon
GAGTGACCTGCCGTGTGGCTATGAGGCTGAGGACCAGGCCAAGCTTTTCCCTCTCCACCAAGAGACAGCAGCCAGCTAATCTCCCACACCCACGGCTGCATACCTGCACTTTCAG
Seq A exon
GTAGCGTCAGGCTGCTTCCTCGGACCAGCCTCAGGTTGCTTCCCTTCTTGCTGACAGCCTCTTTGGTTTTCCTGCTGCTGCTTCTTTTTTTTTTTATCACCTCAAAACTTTAATTATGTAGTTACCCCTCAACTCCTGCTTTCCCCTGTTGGGGGCTACACCTGTGCTGCCCCATGTAATCTGGACGTTGACCTCCCGTGCCCCCTTTTGCTTTCCGTTAGGCTACAGTGGTAACCACAGTACTGTCTTTTTGCCACTAGGGGTCACTGTCACATGTCCAAAGAAGTGAGCTTGGCCGCTGTAGATTAGAACCACAGGGGTGGTAGACTGCAGATCTATCAGGAGACCCTAGGGGGCCATCTCAACCCCACCTCTTCCTCCACCCTGAAATAATTTTGGATGGATAGGTGTTTTTGGAACTAAGACATCTCCAGTTAAGGCGATGTTTGCTTCACGCCTGCACCTGTGTCCCATCCTCTTCCCATCTGTATATGCCACCAGTAAGCTTTAGGAAACGCCCCACGAAATCAGTCAGCGCTCCCCTCCCATCTTGCTCAGTGGAGGTGGCAAAGCCCCTCTTTTTCCTCCTCTGTCCCCAGGTGCTCTCCTCTAGCAGCACAGGAACCTTCTTTGTTCTTGTGTGTCACTGGGTTTCTCACCAAGGTTGCTTTAGGGCCCAGAAGTGGCACAGAGAACATGGCCAGTCTCTTACTGGGCTGCATCTAAGCTGAGCCCTCTCCAGGGGTTTCCCAGAATAGTAAACCAGGCACACACAGGCAGAAAAGTCTGAGAAGCAGAGAAGTAGGAATGCAGAAGAGGAGTTGGGGAGACCTAGGGGTGGAGGTGCAAGCCTGGGTCACGGGGGGCGGTGGTAGGGGGGTCTGCTTGTTGGTATTAAAGGAACAGGACAGTAAACCAAAGTGTGTGCAGATGCCACCTGTTCCTGTTCTGTGACTGAGCTACAAGCTGGGCCCTCACACCCTCTTTCTCTTTCTTTCCCAG
Seq C2 exon
TTTCTAAGAGGGACTGAGGCCTCTTCTCAGCATGCTGCAAACCTGTGGTCTCTGATACTAACTCCCTCCCCAACCCCTGTTGTTGGACTGTACTATGTTTGATGTCTTCTCTTACTTACTCTGTATCTCTTTGTACTCTGTATCTATATATCAAAAGCTGCTGCTATGTCTCTCTTCTGTCTTATTCTCAAGTATCTACTGATGTATTTAGCAATTTCAAAGCATAGTCTACCTTCCTTATTTGGGGCAATAGGGAGGAGGGTGAATGTTTCTTCTTTCTCATCTACTCGTCTCACACTGAGTGGTGTTAGTCACTGAGTAGAGGTCACAGAGATGACAAAAGGAAAAATGGGAGCTAGAGGGTTGTGACCCTTCATACACACACGCACGCACGCACACAAACATGCACACACGCATGCACACACACAAAGCCTTAAGCAGAAGAATGTCTTAGCATCATGAGACAGAGAAATAGACTCTTCCTCCCTCCTCTTTCACATATAGCACAGGGGAAGGTAAAATGGAAGGGCTGCTAATTGAGACATATAATTTTCTTCATACACCCCTCACCTTAATCAAAGGATTCAGGTGTTACTTCTGCCCTACAAAGTCTGCCTTTTGCCTCCCTCTTCCTGTTTTCCCCTGGACTGAGAAATGGGTTGCTCAAGGGACCATTTCCCTTTTTCTTCAAGCTCCTTTTGATATTCCCTGCCCCAGAGCTCATGACCAGAACCCAGAGCTGATTTAAAATATTTTGAAAAATGGAGGAGGCAGACTGCTCCCAGCAGCCTGTCAATGGCTGCTCATCTGTCCATGGAGATGGTTACAGGCAGGTGTAGTCAAAATGATTGATTCCTTGGGTTTGGGGGTGAATAGGCTGGGAAATTTCTGAGCCTTTTTTTTTTGTCACAGTGCCCTCAAGTTGAAGTGATGAGCTGGATTTCTTTCTTGTTCCATACTGGGCGGCATGCTCCTCCCATCTCCACCCCTTGGTTTGGGGGCTTCCAGCTCATTGGCAAAATCTCTCTAGTTGCCTTCCTTTCAAGCTGGAGCCTGACTTTTCCCCAATGTACATTTTTTTTTTCTCCACAAAGAGTTCCTTCTCTAATGTCCCCATCTGGTATTAAGTGCACTTTAAAGAAAGGGGCAGGGTGGATTTTCAAGAGGTGGGAAGCTCTAAGGCTTGACCCTGAGGGGTCTTCTCCCAGCCATTCTCAGCCCATATGCAGCACCCTCCATACTGAAGAGGACTGTTGTTTTAGTTTCAGACGGTCCTTTCCTTCCACATGGTGCTAAGGTGGTTTTCTAGGTAACTGCAGGGATGGAGGTCACTAGCCATTCCAAACCAGGAGAGAAAGTCTGGTGTCCTGATATCCAGTCTTTTCTAGGAGGAAGACCAAGATTCTCCAGCGGCAGGGCAGCCTATCACCCAACTTCTAAGTCAGGAAAGGAAGCTGAGTGGGAATGCCAGCTGGTAAGCGCAGGCTGCACTGGCCCATGACTCCTTCAAGGAAAAGAGGCCCTGCTCCCTTTACCTGCTGAGCTCCTTTTAGCAGTTAGGGAGAACTGCAGGGGGAAAAATACCAGTGGAGTGTGGAATAAATCCAAAGCAGTGATTTTTAAATGTTTTTCAAAAACAAATCTTACATAGAACCCCAATATAAAAAATAAAGTAATGCAGACCTGGGCAGTTTGCATTTTTTTTTTTTTTTTTTTTTGGTGGAAGAAGTCTCAGCGTCTCTTAGGACTGACTGTTCAAAGGCTCCTCAGCAAATGAGCCCTTGAACAGTCCTAAGAGACCCTGAGGATTCTGTGGAGTAGTTTGAAAACCATTGTTCTGAGGAAGGGGGTCCAATCTGGCTCCTCTGCACTAAAGCTGCAACTCATGGAAAAGAGGGCAACGGTGGGGTAGACAAGCCATGCTGTCTCCAGACCCACTAGGGTGGAAGGAAGGTTCCTGTGGGCCTGTGGACTTAGGCTAATATTTGCTGTCAGCAGGGCACTTAAGAATCCAGGGGGTTTTATGTAATGTTGCCACCACATGGTTCTTTTAAAAACACATAAGGAAATGTGAGGGTGTAGCGCAGATGAGGAGAGAGATGACACAGAGGGAGCAGCCTTCTCTTTAGCAAGATGTAAGGGAAATATAATTCACTTACATAAAAAAGAAACAACACACACGCAAACCCTTCACCAGAAGCTTCACACTACATCCTCCTCCTCCTCCTGCTCCCCACCTTCACCGCATCCCTTTCAGAGCCAGGGTCACTGCAAGGGGCACCTGGCCTGCCCACTCACATCTGCCAAAATGTTGCATGCCAGCGTGGAAGACAAACCAAACTGCGCAACCCCCTGTGTGTATTTACTTGGTGTACATAGATAACTTTAAAATAAAATAAATTCAATGATAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155980:ENST00000455537:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTTTTCCCTCTCCACC
R:
TTCACCCTCCTCCCTATTGCC
Band lengths:
343-1345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development