RnoINT0079499 @ rn6
Intron Retention
Gene
ENSRNOG00000005299 | Kif5a
Description
kinesin family member 5A [Source:RGD Symbol;Acc:1303035]
Coordinates
chr7:70513343-70520563:-
Coord C1 exon
chr7:70520452-70520563
Coord A exon
chr7:70515985-70520451
Coord C2 exon
chr7:70513343-70515984
Length
4467 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCTTTCTCTTTCTTCCCCAGTTT
3' ss Score
11.3
Exon sequences
Seq C1 exon
GAGTGACCTGCCCTGCGGCTATGAGGCTGAGGACCCAGCCAAGCTTTTCCCTCTCCACCAAGAGACGGCAGCCAGCTAACTCCCAATCCTGGCTGCATATCTGCACTTTCAG
Seq A exon
GTAACTGAGGCAGCTTCCCTCCCTGGTCCCAGTCTCCACCTGTCTGGCCCTGGCCTCCTCTCCTGTTCATGTATATGTGTTTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGTGCGTGTGCATGTGTGTGCGTGTGTGTGTGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTCTGTGTGTGTGTGTGTGTGTGTTATGTGTGCCCCCACATCCAGAGGCCAAGGTTGGTTGGTGTGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGCGTGTGTGTGTGCGTGTGTGTGCATGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTTATGTGTGCCCCCACATCCAGAGGCCAAGGTTGGTTGGTGTGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGCGTGTGTGTGCGTGCGTGTGCGTGCGTGTGTGTGTGTGTGCATGCGTGTGCACTCACATCCAGAGGCCAAGGTTGGTTGGTGTGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGTGTGTGTGTGTGTGCGCGTGCGCGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGCGTGTGTGTGCGTGTGTGTGTGCGTGCGTGCGTGTGTGTGCGTGTGTGTGCGTGCGTGCGTGTGTGTGCTTGTGCGTGTGTGCGTGCGTGTGTGTGCGTGTGTGTGCGCGTGTGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTATGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGCGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGTGCGTGTGTGCGTGTGTGCGTGCGTGTGTGTGCGTGTGTGTGTGCGTGCGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGCATGTGTGTGCGTGTGCGTGCGTGCGTGCGTGTGCGTGCGTGCGCGTGCGTGCGTGCGCGTGCGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTGTGCGTGTGTATCTTCCTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTGCGTGCGTGTGTGTGCGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGCGTGCGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGTGTCTTCCTCTGTGTGTGTGTATCTTCCTGTGTGTGTGTGCGTTTGTGTGTGTGCGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGTGTCTTCCTCTGTGTGTGTGTATCTTCCTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTTCTCTGTGCGTGTGTATCTCCTGTGTGTGTGTGCGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGCGTGTGTGTGCGTGTGTGTGCGTGCGTGCGTGTGTGTGCGTGCGTGTGTGTGCGTGCGTGTGTGTGTGCGTGTGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGGTGTCTTCCTCTGTGCGTGTGTATCTTCCTCTGTGCGTGTGTATCTTCCTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGTGTCTTCCTCTCTGCGTGTGTATCTTCCTGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTGTGCGTGTGCACTCACATCCAGAGGCCAGCTTTGGTGTGGTGTCTTCCTCTCTCACCTTCCATCTTACTTTTTGAGATAAGGTCTCACACTGATCCTGGAGCTTGTTGTTTTGGGTAGACCGGCTGGCCAGTCAGCTCTCACCCTTCCCCCCTCCCTCGCCCCCATCTGCCCATTTCTGTCCCCTGTGCTGGGGTAACAGACTGGCCTTTATGTAGGTGCTGGGGATCTGAACAGAGTCCTCATGTCCATTCAGTAAGCATGTTATGAATGATCCATCTCCCCACTTCACCCCCTTTTTAAAAAGAAAAATCTCAAGATCTTTCAACTCCTGCTTGTCCCCATATTGTGGCAGCACACGCCTATAATCCCAGCACGCAGACAGAGGCAGGGAGATCATGAGTTTGAAGGAGTTCTGGGTTAGTGAGACCCTGTATCAAAACCAAACAAAAGCATTTGCTAAAAGCCCAAATCACAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCAAATCACATCCATATCCAATCCTGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCCCAGCCCCTAAAATTTTTTTAAAAGCAAGGGCTGCTGTCCATCTACCACCTACAGCCACACAGGTTGGAGACCTTAGTTATGGAGAACTTGAGAGAACATCCCATTGTGCCTATGCCTTAACCCTAAAATAATCTAATGCCTAAGCCGTCTCGTGTAAAGGTGATGCCTGCCTTGTTCTTGAGCTCTATTCCTGTGTCAGCATATACTACCAAAGACTATAGTGCTGTCTGACTCTTGGTGCCTCTAGCTAGTGACAACAGTATGGTCAGTAAAAATGGAAACCAGCTGCCTCCCCACCCCAAACCCTCCAGCTTCAACACCTCTCTCTTTTTTAAAATGTATTTATCATATATAAGTACACTGCAGCTGTCTTCAGACACACAGGAAGAGGGCATCAAATGCCATTGCAGATGGTTGTGAGCCAACATGTGGTTGCCGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTTTTAACCACTGAGTCATCTCTCCAGCCCAACACCTCCCTCTTGCCAAGTCCCCTGTAGCACCAGGAACCCCTCGTTGTACCTGGTGTCCCCGGGCACCTTGACATGGTTGTTTTGAACCCCAGATGGACAGTTTTGTCGTGCACATTAGCTCCTCCGCTGACTAGAATCAAGGGGAAATGTGTGATCTCTTCATAGTGCTGGGCTGTACTAGGCCACATCTCTCCAGGCTTTCCCAGGACAGTGGTTCAGGCAGATAAGCAGGAGGAAGGGAGATCTGTGAAGGGGGAGAGGATGCTGGGAGGATTTGGGGTGGAGAGGCATGGGTTAGACTGACTGGAAGTGGGGGTATGGCTGGATTTGTGGTGTTAAAGGAACTATAAACCAAAGTGTGAGCTATGCCGTCTGTTTCTACACGGAAGCCGGGCCAGGCTGGTTCCTCACACCTTCTTTCTCTTTCTTCCCCAG
Seq C2 exon
TTTCTAAGAGGGACTGAGGCCTCTTCTCTCAGCATGCTGCAAAACCTGTGGTCTCTGACACTAACTCCCTCCCCAGCCCGTGTCGTTGGACTGTTTGATGTCTCCTTCTACTCTGTATCTCTTTGTACCCTGTATCTATTTATCAGAAGCTGCTGCTACGTCTCTCCTCTCTGTCCTACCCTCTAAGTATCTGATGATGTATTTAGCAGTTTTAAGCATAGTCTCCCTTCCTCGCTGAGCATTAGGGAGGAGGGAAACGTTTCTCCTTTCTTCCTTATACTTGTTTCTTACACCAAGTGATGTCAGTCACTGAGTAGAGGTCACAAAAGATAAAGAAAAAAACGGGAGCTGGGAGGCTGCCATCCTTCTCTCTCACAAACACACATGTACACGCACACCCACGCGCACGCACACCCACCCACACAGTGTACATACAAAGCCTTAAGCAGAAGAATGTCTTAGCATCTACGAAAAGAGAGAAACAGACCCCCCCTCTTTACACAGAGCACAGAGGAGAACCCAGTGGAAGGTTTGTGACAATGCCCACCCCTCCACACATACACTCCTCACCTGAGTCAGCAGACTGCAGGTGGTGTCCTCTGTCCTGTGAAGTCGGCCTTTTGCTCCCTTCTTCCCCAGTTTGAGAGCATGGATTGTTCGAGGGACTATTTATTTCCCTTTCTGGCCCAAGCCTCTTTTGATACTTTCCACCCCAGATATCACAGCCAGAACTTAGAGTTGGTTTAAAACATTCTTCTGAAAAGTTGAGAGGGCAGACTGCTGAGAAACAGCTGCTCATCTGTCCGCACCAATAGTTAGAAGCAGGTGGAGTCAGGATAGTTGGCTCCCTGGGCCGGGGGAGTGAGCAGGCTGGAGGACTACCGTGTGCTGTCCTGTCACAGCACCCTCAGGTTGAGGCCAGAAGCTCTGTCTTTCTCCCATATTGGGCTGCATGTGCTTCCCACCTCTGACTTTGGTTTGGGGCTTCCAGTTTATTGACAGAATAGCTGTCTCTAGATGCCTTCCCTTCAAAATGGAGTTTGGCTTGTTCCTCCCCAAACAGAGTTCCCTCTATAATCTCCATCTGGTCTCAAGTGCACTTTAAAGACGGGTGGGGGAGCAGGATGGAGCATGGCAGCAGGCAGCTCCCCTGACACAGGATAAAGCTCTGCTTTTATTCCCACCACTGCAAAAGCAAGAGCGGGGTGTGGTGGTTCACACTTTCCAATGTTGTTCTCAGGAAGCCAAGGTAGGAAAACTGCTAAATTTGAGGCTAGCCTGGACTGCTACACAGTTAGATCCAGGAGAGCTTGTGCTATGATGGGAGAAACCTCTATCTCAAAATGAAAGAAAGGAAAGACAGACAGACAGACAGACAGACAGACAGACAGGAGGGAGGGAGGGAGAGAGAGAGTGCAAGAGAGTGCGTAGGGACTAAGAGCTTGAACCTAATGCTCTCCTCACAGCCATCCCAGCCCAGGCCCCTCCTGCCCAGCAGTGAAGAGGATGCTTCAGTTCAGATAGTCTTTCCTGCCCATCTGCTAAGGTAGTTTTCCAGATAACTGCAGGGATAAAGCTCAGTACTCAGCCTAAGCCAAGAAATATAGTAGCCAGATACTCGGTCTTACCCAGGATAGGGGACCAGGACTCTCCAACAGAGGGCAGCCTGCCGCCCAGACCCGTCTAGGCCTCGGAAGAAAACTCCCTGTGGATGACAGCTGGCAAATAGTGGGTTGTGACTCCTTCAAGGGAAAGTTTCTGCTCTTTTTCCCTATCAGGGAGTGATAGGGATGAAGACAACATCAGACTGGGAGAACCCCCAGGTGGCAGTTTTCAAACACTTTAAAAATAAATCCTATGTAGGATGATGTAAGCAGGATGAGCCTAGGGCTTTGACCGTGACTCAGTGGTACCGCGCGAAGACACTTAGTGTGACAAGTCTGGGGCTTCAGTCTATCTCTGGAACTGCAAAAAACCACAACCAAAATGGTGAAGTAATTCAGAGCTGGGAACTTTATTATTTCTTTCTTTCCATGCCCTACCCAGTGGAAAATGCTTGCTTAGTTAGAGGGCCCTGGGATAGCCCTAAGAGCTTGGAACTCACTTATTTGCAAGAGGGGTCCAATCTGCTCCCCCCACCCTCCACCCTGAAACCACAACTCAAAAGAAAGGTCAGGAGGTGCAGACAAATCACACTGCCTCAGAAGGAAGAGAGCGTCCTCTGTGGCTCACACCAGTAGGACACTTGAGAATCTGAGGGCGATCTTGCCACCCAACCATTCTTTCAAAATACAAGGAGGGAGATGTGGAGGTGTACAGCAGGGCAGACAAGGAAGGAGGTGACAGTGGTCAGCCTTCTCTTGGCAAGATGTAAGGGAAACGGCCATTTGCCACCCTAAAGAAACAGCCCTTCATCAGAAGGTTCTCAGCACACACACTCCTTGTGTTCACTACATCCCCTTCAGAGAGCCAGGCCACCACAGGGGCCCCTGGCCTGACCACTTACATCTGCCAAGATGAAATATTGCATGCCGGCGTGGGAGACAAACCAAACCACACAAATCCCAGTGTGTATTTACTTGGTGGACACAGATACCTTTAAAATAAAATGAATTCGATGATGACTGGTTGTCGCCTTTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005299:ENSRNOT00000007721:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]