MmuINT1021726 @ mm10
Intron Retention
Gene
ENSMUSG00000074657 | Kif5a
Description
kinesin family member 5A [Source:MGI Symbol;Acc:MGI:109564]
Coordinates
chr10:127225696-127229856:-
Coord C1 exon
chr10:127229745-127229856
Coord A exon
chr10:127228422-127229744
Coord C2 exon
chr10:127225696-127228421
Length
1323 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TCTTTCTCTTTCTTCCCCAGTTT
3' ss Score
11.3
Exon sequences
Seq C1 exon
GAGTGACCTGCCGTGTGGCTATGAGGCTGAGGACCAGGCCAAGCTTTTCCCTCTCCACCAAGAGACAGCAGCCAGCTAACTCCCAACCCTGGCCACATATCTGCACTTTCAG
Seq A exon
GTAGCTGCAGGCCACTTCCCTCCCTAGCCCCAGCCTCCTCCTGTCTGGCCATGGCTGCTTCTCCTGTTCATGTGTATGTGTATATGTTTGTATGTGTCTGTATGTGTGTGTTGTGTGTGCATGAGTGTACCCACATCAGGAGGCCAAGGTTAGTAGGTGTGGGTGTCTTCATTTGTGTGTGTGTGTGTGTGCGCGCTCACATCCACAGGCCAGCCTTGGTGTGGGTGTCTTCCTCTCTCACTTTCCATCTTACTTTTTGAGGTCTCTCACAGAACCTGGAGCTTGCTGTTTTGGGGTAGACTGGCTGGTCAGTCACCTCCCCACCCTCCCTCTGTCCCACCCCACCCCCCATATCTGCCCATTTCTGTCCCCTGGGGTACTGGGGATCCAAACATAGTCCTCATGTCTGTTCAGTAAGCACTTAGTGACTGAGCCAAAATCTTCCAACTCCTGCTTGGCCCTGTATGGCTGCACGAGGCAGAGGCAGGGAGATCATGAGTTCAAAGGAGTCCTGGATTCATGAGACCCTGTATCAAAACCAAACAGAAACATTTGCTAAAAAGCCCAAATCTCATTCATAGCCAACCCTGACCTCCCATGGCCCCAAGCCTTCCCTTAGGTGCTGGTGGTAATCACAGTACTCATTTCTACCACTAGGGGTCACTGTCATACATTAAAATTTTTGTTAAAGGCAAGGGCTGCTGTCCATCGGTCTACTACCTTGTGCCTTTACCCTAAAATAGCCTTAAAATAGCCTTAGATACACAGAGATGTCTAAGCCACCTCGTGTAAAGGTGATGTCTGCACTACTCCTGGATTGACATATGCTGCCAAAGACTCTCGGTGTCTCTAGCTAGAAACAACAGTACGGTCAGTAAAAATGGAAACCAGCTGCCTCCCCATCCACTAACCCTCCAGCTTCAACACCTCCCCAATCACACCAAGTCCCCGATCACACCAGGACCTGGTGTCACCGGGCATATTCCATGTTTGTTTTAGACCCCAGATGGTCAGAGAGACCTATGTTATGGTACACTTTATAGCTCCTTTGCTGAATCAAGAGAAAATGTCCAGTCTTGCTGAGATGCACGAGGCCGCGTCCCTCCCAGGCTTTCCCCGGACAGTGGCTCAGGCAGAAAAGCAGGAGAGAAAGAGATGTGTTAAGGGGGAGAGGATGCTGGCAAGACTTGGGGTGGAGAAACATGGATTGGACTGGCTGGCAGTGGGGGGTGGGGCTGGCTTCGTGGTGTTCTATGTTGTCTGTTCCTACACAGAGGCCAGGCCGGGCTGGCTCCTCACACCCTCTTTCTCTTTCTTCCCCAG
Seq C2 exon
TTTCTAAGAGGGACTGAGGCCTCTTCTCTCAGCATGCTGCAAAACCTGTGGTCTCTGACACTAACTCCCTCCCCAGCCCGTGATGTTGGACTGTTTGATGTCTCCTCCTATTCCGTATCTCTTTGTACTCTGTATCTATCTATCAGAAGCTGCTGCTGTCTCTCCTCTCTGTCCTCCCCTCTAAGTATCTGATGATGTATTTAGCAGTTTTTAAGCATAGTCTCCCTTCCTCGTTGGGCGTTAGGGAGGAGGGAATATTTCTTCTTTCTTCCATAGACTCGTTTCTTACACCGAGTGATGTCAGTCACTGAGTAGAGGTCACAAAAGATAAAGGAAAAATGGGAGCGGGGAGGCTGCCCTTCTTCTCTCTCACAAACACACGTGTACACGCACACACGCATGCACACACAGTGTACATACAAAGCCTTAAGCAGAGGAATGTCTTAGCATCTACGAAAAGAGAGAAATAGACCCCTTCCCTCTTTACACAGAACACAGAGGAGGCCCCAGTGGAAGGTTGCGACACCGCTCTCTCCCTCACACATACGCATCCCTCACCGGAGTCAGCACACTGGAGGCGGTCTCCTCTGCCCTGTGAGGTCTGCCTTGTGCTCCCTTCCCTGGTTGGAGAGCATGGACTACTCAAGGGACTGTTTCCCTTTCTGGCCCAAGCCTCTTGTACTTTCCACTCCAGATATCACAACCAGAACTTAGAGTTGGTTTAAAACATCTTCTGAAAATTCGAGAAGGCGGACTGCTGAGAAACCGCTGCTCACCTGTCTGTGCCAATAGTTATACGCAGGTGGAGTCAGAATGGTTGGCTCCCTGGCTCTGGGGAGTGAGCAGGCTGAGGGACTACTGTGTGCTACTCTGTCACAGAACCCTCAGGTTGAAGCTCCAAGCTCGTTCTTTCTCCCATATTGGGCTGTGTGTGCTTCCCACTCCTGACTTTGGTTTGGGGCTTCCGGTTTGTTGGCATAATCGCCGTCTCTAGATGCCGTCCCTTCAGAATGGAATCTGGCCTGTTCCCAGTATACCTTCCTCCCCCAAACACAGTTCCTTCTGTAATCTCCATCTGGTCCCAAGTGCACTTTAAAGACAGGGGTGGGGGAGCAGGTTGGAGCATGGTGGCAGGCGGCCTCCCTGACACAGGAAAAAGCTCTGCTGTTGATCCCAGCACTGCAAAAGCAAAAAAGCAGAAGCTGGGTGTAGTGGCTCACACTTTCGAATGTTGCTCTCAGGAAGCCGAGGTAGGAAAATTGCTAAATTTGAGGCTATCCTGGACTACACAGTTAGATCCAGGAGAGCTTGTACTATGACGGGAGGAAATCCTATCTCAGAATGAAGGAAAGGGAAGAAGGAAGAGGAAGGAAGGAAGGAAGGAAAAGTAAGGAAAGGGAGGAAGGAAGGAAAGAAAGGAAGGAAGGGAGGAAAGGAAGGAAGTGGGGACAGGACAGTTTTTTTCCGAACTGGCAGGGGCTAAGAGCATGAAATTAATGCTTTCCCCACTGCCATCTCAGCTCAGGTCCCCTCCTGCCCAGCACTGAAGAGGACGGACGTTGCTTTAGTTCAGATGGTCCTGTCCTCCCATCTGCTAAGGTATTTTTCCAGACAGCTGCAGGGATGAAGGTCAGTACTCAGCCTAAGCCAAGAAAAACAGTTGAGTATCCAGATACCCAGTCCATCCCAGGATGGGAGACCAGGGCTCTCCAACAGAGGGCAGCCTGCTGTCCAGACCCTGCTAGGCCTGGGAGGAAAACTCCCTGTGGGTGACAGCTGGCAACTATGAGCTGTAGTGGCTGTGACTCCCTCAAGGGACCGTTTCTGCTCTGTAGGGAGTGATTGAGATGAAGACAGTATCAGACTGGCATGGGAGAACTCCCAAGTGACAATTTTCAAACACTTCAGAATAAATCTGATGACTAAGCAGAACCTAGGGCTTTGACCATGGCTTAGTGGTACCATGCGAAGACACTTAGTGTGACAAGTCTGAGGGTTCAGTCTATCTCTGGAACCGCAAACAACACGAAACAACCAAAATGGTAAAGTAATTCAGAGCGAGGAACGTTTGTTATAATTTCTTTCTTTTCATACCCCCTCACAGTGGAAAATGCTTCATTCATTGGAGGGTCCTGAGATAGCCCTAAGAGCTTAGAACTCACTCATTTGCCAGAGGGGTCCAGTCTGCTCCCCCCCCCCACACACACACACACTCTCTAAAACCACAACTCAAAAGAAAGGTCAGGAGGTGCAGACAAATCGCACACCTCAGACACAGTGGGCAAGGAAGGAAAAGGGTGTTCCCTGTGGCTCATGCTGGCAGGATGAGGATGCTTGGGATTCTGAGGGAGTTTGCATGATCTTGTCACCAAACGATCCTTTTCAAAATACAAGTGAGGAGATGTGGAGGCGTGCAGCAGAGCAGATGAGGAGGGGGGCGGCAGTGGCCAGCCTTCCCTCCTCGGCAAGATGTAAGGGACACGGCCATTTGCTATGCTAAAGAAACAGCCCTTCACCGGAAGGTTCTCACCACATCCTCCCCCTTACCTTCACTACATCCCTTTCAGAGAGCCAGGCCACCACCAGGGCCCCTGGCCCGCCCACTTACATCTGCCAAAGTGAAATGTTGCATGCCGGCGTGGAAGACAAAACCAAACCGCACAAATCCCAGTGTGTATTTACTTGGTGGACACAAATATCTTTAAAATAAAATAACTTCGATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074657:ENSMUST00000099172:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCTATGAGGCTGAGGAC
R:
TATTCCCTCCTCCCTAACGCC
Band lengths:
356-1679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types