HsaINT0088900 @ hg38
Intron Retention
Gene
ENSG00000164344 | KLKB1
Description
kallikrein B1 [Source:HGNC Symbol;Acc:HGNC:6371]
Coordinates
chr4:186252017-186254763:+
Coord C1 exon
chr4:186252017-186252185
Coord A exon
chr4:186252186-186254587
Coord C2 exon
chr4:186254588-186254763
Length
2402 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TATTTATTTTTCTCTCCTAGGCT
3' ss Score
10.26
Exon sequences
Seq C1 exon
TCTGCACAACAAAAACAAGCACACGCATTGTTGGAGGAACAAACTCTTCTTGGGGAGAGTGGCCCTGGCAGGTGAGCCTGCAGGTGAAGCTGACAGCTCAGAGGCACCTGTGTGGAGGGTCACTCATAGGACACCAGTGGGTCCTCACTGCTGCCCACTGCTTTGATGG
Seq A exon
GTAAGTGTTGGATGCATCTCATCCAGAGTCTTATCTTGGCTTTTCATTTTGAAGGATCTATGATCAGCTGCTTCACCGCCATGTGACTTTATGAATAGAGACGTGTTAAAGCGGGGATGGTATTCACAACATTTAACTTATAGGGTCCAAGCACTGACCAACCTGACCATTAGAACAGAGTGTGGTCTCTGTACAGGGCAGATGGCGCTGAGTGGGTATTCTCCACAGAAAGAGAAACGAAGACAGTACCCCACTCCTCCAACCCACCACCCACCACCAATCCCACCACCAATTCCACCACCAATCCTGCCACCCACCACCAATCTCACCACCAATCCCACCACCAATCCTACCACCCACCATCAATCTCAGCACCAATCCCACCACCAATCCCACCACCAATCCCACCACCTACCCCACCACCAATCCCGCCACCCACGACCAATCCCACCACCGATCCCGCCACCAATCCCACCACCAATCCCACCACCTACCCCACCACCAATCCCGCCACCCACGACCAATCCCACCACCGATCCCGCCACCAACCACCAATCCCACCACCAATCCCACCACCAATCCCTGATGTGTTCTTCAAAGACTTATTTGTCAGGCCCATAGAAATGTTACTTCTTGCTCTTTGATTCATAAATATACTAAGTCATAATAATTTTTAAAAGTGAGAGTTTCGTACTCTGTATATTTCAATGTATATAATTTGATCTATTTCAATTTATTGGTCAAATAGTAGACATGTTAGGTAAGTCTTAAAATACTGAGGCTTTGGAGTTAGACAGAACATGGCTTAAGTGACAGCTTTGCTGCTTATTAGAGGTGTGGCCCTAGAAGATTTGTAAATCCCTCTGAGCTTTATTTGATCTAAAATATGAATAGTAATAGTCCCGAATTTGTAACGTTGTTGGGAAGATTAAGTGACACATTTAAAATGCTTAGTACTGTGTGTAGAACATAAACACTTCAAAAAATGTAAACTGTGATTTCTATATTCAATAAGAAATGTAGAAATGGACAAAGCATATAAAAAGCAAAAGAAATACTAGAAGACACTTGATTTTTCTCAAAAATAAACACACCAAGTATTTTTGTTTTAGTGAAATTCATGCTTACATGCTGTATACTAGGATTGAACATACTGCCACCAAAATATAGCAGTCGGTGGTACATGTGGGTGGAGCAAGACCCCTCCACCTTGTCATCGTGTGAAGGGGCTCTGCCATACATGACCTTGCATGTGACTTTAAGGTGGTTGGCCTGGAAGAAAAGTCCCAAGATGGGAAATAGTAGGTGTCTTTTTTACTAAATGCACTCCAATTTGGGACCAAAAATTTTCATTCTTGAAGGCTCAGTATTGTGAGTTTATAAGAGATAATAGACATAAAAGTGTAATGATTTCATTGCAAATAAAAAAAGGCCCCTTTGCACCTGATATCTCCATCATTTTTCTAGAATTTTGTGCACACATGCCTTGCACTACTTGGTGATGATAAAGATTTCCAGATCTTTGCACAGAATAAGGCTTTGCTTTAGATCAGAATTTTGGATGTACTTAGTATACATTCATCTTTTAAATAATCTATTTACATTTTCATACTTTCCAAAATACAGATATATTTTATTTTATTTATATATTTATTTAATTTATTTTTTGAGATGGAGTCTCTCTCTGTTGCCCAGAGTAGAGTGCAGTGGCACAATCTTGGTTCACTGCAGCCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCGCGCCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTCATCATGTTGGTCAGGCTGGTCTCGAACTCCTGGCCTCAAGGGATCCACCCACCTCGGCCTCCCGAAGTGCTGGGATTACAGGTGTGGGCCACTGTGCCCAGCTGTATAGAGATATTTTAAACAACACTAAAGTCCTCCTACTTTGACTAATTAGAAGAGCATTAGAAGATCAGCCTGACTTCTTGACAGTTCTGAATTTAGTGGAGCAATGAGGTTCAGCTTTGGTGAATGAGCTTAATTTTTCCATGATAAACTGCTAGTTTCTTCCCACTACAGTGTCTCTCAAAAATGGGACAGCAACATTCTTTTTGTTTTCACTTGCAGTAAGCATGATGCAATTACATAAATGTACACTTTTCAATTTGTTAAATAGAATCTTCAGAGATTCACTACTGCCGCTATTGGTGATGAAAAATTACCAGAAGGAGGAATTAGGTAGGAGAAAATGTGTCCTATGTATTTCCTTCCCAGTTCTTTGAAAGAGAGTGATAGGAAAAAGGAACACTATTGAAGGAAGGACTGCCCAGTTTCAAACAGGTATTTATTTTTCTCTCCTAG
Seq C2 exon
GCTTCCCCTGCAGGATGTTTGGCGCATCTATAGTGGCATTTTAAATCTGTCAGACATTACAAAAGATACACCTTTCTCACAAATAAAAGAGATTATTATTCACCAAAACTATAAAGTCTCAGAAGGGAATCATGATATCGCCTTGATAAAACTCCAGGCTCCTTTGAATTACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164344:ENST00000264690:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.3=82.5)
A:
NA
C2:
PF0008921=Trypsin=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development