RnoINT0080217 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50169044-50171158:+
Coord C1 exon
chr16:50169044-50169212
Coord A exon
chr16:50169213-50170982
Coord C2 exon
chr16:50170983-50171158
Length
1770 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTCTCCTGCTTCTCTCCTAGGAT
3' ss Score
11.04
Exon sequences
Seq C1 exon
ACTGTACGACAAAAATAAATGCACGTATTGTGGGAGGAACAAACTCTTCTTTAGGAGAGTGGCCATGGCAGGTCAGCCTGCAAGTAAAGTTGGTTTCTCAGAATCATATGTGTGGAGGGTCCATCATTGGACGCCAATGGATACTGACGGCTGCCCATTGCTTTGATGG
Seq A exon
GTAAGTTTTCGATCCATCTTATTTTACCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCATGCACGTGTATGGACCCTTACCTGCACATGTGTATATAAAGAGGTTAGCCTCAGGTATCTTCGTGTACTGCTTGCTTTTCTTATTTGTTGAGACAGGGTTGTTCACTGAGTCTAGTGCTAACCCTTTTGACTAGACTGGCTGCACAGCCAGTCCCAGAGATCTGTCTGCCTCTGTCTCCCGGCACATTCTTAGCCCTAGTTCAGTGTTGGGGCTCTGAACTTGAATGTTCATGTTTGAGAAGCAAGCCCTTTGCCCACTTAGCCATCTCCTTGGCCCTGAGGCATTTGTTTTGATGATAATAAAAGTTTCCAAGCCTTTGTCTAGAAAATATTATGATTTTAAATTTAGCTTATATATCTTTTACATGGTCAATTTAAAATTCAAAAGATATGTAGGTACATTTTAAGCAACAAAATAACCTTAATTCCTACTGGGGCTTATTTTAATCGTTACAGCTGCTTGATGGCTCTGATGTAATGAAAGCAATTGCTTTTAGGTCTGGTAAACTGAACTTAATTCTCCTAAAGCTTCTTCAAAAGGCACAGAAGCATTCCCGTATTTTTACTTGTAATAAATATAAAGCAATTGTTAAGTTTGTTTTGAGTATTTTCAACCACAGCTTTTATACTGTGCTCTGTAATCCTATATGGACACAGTTCAGCTGAATATGAGCCCCTCAAAGATTTTAGAAACAGTAAAGGGATCCTGAAGGAACACTGACCAAAATTCAATCAAAATAAAATGTTATGACAAACCTGAGGCATTCTGAGAATCCTCTCCTGTGCATATTTCAGGACTCCACTGGGTTTGTAAACATACAACATGCTTACTGTGCACTGTGCATGCCACCATGCTGTGTAGTACCAACAGATGGTACCCTAAAGACAATCAGACTGAAGATTATGTAATGTTGTGAACCATGGTGTCTGTAGTACGTGTGCCTTAGGTTTTCTGCTCTTACAAAACATAAGAGTTTAATTTCAAAGAACAAAAGCATTAAAATGTGTCTTGTCACAGTCGCCTTTGGGTTGTACAGTGTTAAACTTTGATTTTCAACATTGTTTCATAAAAACTCATTGAATGAACTTGGGTTTGGGTATTAGAGTTTCCAAAGCTTTCTAAATGGTCCTTAATCTAAGACTATCATTTGGTCCTCCATATGTATGTGAAGTGGTGTTCTTAGCATTATCAGTTATAAAAGTAAAATATTAAGAAACTCTTAAAAGCATTGAGGATGTTCTTTGTCTTATAGTATCAAATATTCAGACATATTTTAATTATGTATGTCGACATAAATAAACACGTTATTCTATTAAGATGTGCATTTGCTGATAAGTGGTAAAATTATCTGTGCACCAAAAATTGTCTTGTAGTAAGTTTCTTTATAATATATCATCAGTAAATGTTTAATATGTGTGCCTGCTTCATGTAATCACACACAAAAACAAAAAATTATCTTTTCAGGCAAAAGGGAGTCTCACATGGACAAAGTTTTATTATAAACTAAATCTTCGAAGTCCAATACTGCTGCTGTAAACAACAATAGGTGGCCTTGCCAGAAAAAGTAACTAGGTCATATGGAATGTTTTCGTTCTTCTCCCTCCTCCCCTTCAAAGAAATGTGCTAAGAAAAAGGAGCAAGGAAGGATGCCAACGTTACTTTGTTCTCCTGCTTCTCTCCTAG
Seq C2 exon
GATTCCCTATCCAGACGTGTGGCGTATATATGGCGGGATTCTTAATCTGTCAGAGATTACAAACAAAACGCCTTTCTCAAGTATAAAGGAGCTTATTATTCATCAGAAATACAAAATGTCAGAAGGCAGTTACGATATTGCCTTAATAAAGCTTCAGACACCGTTGAATTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.3=82.5)
A:
NA
C2:
PF0008921=Trypsin=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTACGACAAAAATAAATGCACGT
R:
AGTATAATTCAACGGTGTCTGAAGCT
Band lengths:
344-2114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]