HsaINT0088971 @ hg38
Intron Retention
Gene
ENSG00000134539 | KLRD1
Description
killer cell lectin like receptor D1 [Source:HGNC Symbol;Acc:HGNC:6378]
Coordinates
chr12:10309388-10309688:+
Coord C1 exon
chr12:10309388-10309480
Coord A exon
chr12:10309481-10309625
Coord C2 exon
chr12:10309626-10309688
Length
145 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTCTAATCATTTCTTATAGCTT
3' ss Score
7.67
Exon sequences
Seq C1 exon
TGTTTAAGACCACTCTGTGGAGGTTAATTTCTGGGACCTTAGGGATAATATGCCTTTCGTTGATGTCTACGTTGGGAATTTTGTTGAAAAATT
Seq A exon
GTAAGTTTTTCTAAGCAAGTCTCCATAAAAATCAAAACTGTGAAGACATCATTTAATAATAAAGGCTTCATCTTGCTAATGTGTAATATTTTAGTATTTCATAAACCCATACCTAATTAAACAAATTTCTAATCATTTCTTATAG
Seq C2 exon
CTTTTACTAAACTGAGTATTGAGCCAGCATTTACTCCAGGACCCAACATAGAACTCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134539:ENST00000381908:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059667=Chordopox_A33R=PU(24.7=71.9)
A:
NA
C2:
PF059667=Chordopox_A33R=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGTGGAGGTTAATTTCTGGG
R:
CTTTCTGGAGTTCTATGTTGGGTCC
Band lengths:
146-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development