MmuINT0088267 @ mm9
Intron Retention
Gene
ENSMUSG00000030165 | Klrd1
Description
killer cell lectin-like receptor, subfamily D, member 1 [Source:MGI Symbol;Acc:MGI:1196275]
Coordinates
chr6:129543506-129543808:+
Coord C1 exon
chr6:129543506-129543600
Coord A exon
chr6:129543601-129543745
Coord C2 exon
chr6:129543746-129543808
Length
145 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TCTATAATAATTTCTTATAGCAT
3' ss Score
6.05
Exon sequences
Seq C1 exon
AGTTTCTAGGATCACTCGGTGGAGACTGATGTCTGTCATCTTTGGAATAAAATGTCTTTTCTTGATGGTTACTTTGGGAGTTTTGCTGATAAATT
Seq A exon
GTAAGTGTTCCTAAGCAAGTATATAGGAAAAAAATCAACATTGTGATTAAATAATTTAATAATAAACATTTAATTTTTCTAATGTGTAATATTTTATTTCATAAATACATGTCAAACTAAGCAAGTCTATAATAATTTCTTATAG
Seq C2 exon
CATTTACTATACAGAACATTCAATCAACACCTTCTCCAACCACCACTGTAGAATTCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030165-Klrd1:NM_010654:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054176=Peptidase_C41=PU(0.1=0.0)
A:
NA
C2:
PF054176=Peptidase_C41=PU(23.3=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCTAGGATCACTCGGTGGA
R:
TCCTGGAATTCTACAGTGGTGGT
Band lengths:
156-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: