RnoINT0080276 @ rn6
Intron Retention
Gene
ENSRNOG00000060246 | Klrd1
Description
killer cell lectin like receptor D1 [Source:RGD Symbol;Acc:2978]
Coordinates
chr4:163363739-163364040:+
Coord C1 exon
chr4:163363739-163363831
Coord A exon
chr4:163363832-163363977
Coord C2 exon
chr4:163363978-163364040
Length
146 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTATAATAATTTCTTATAGCAT
3' ss Score
6.66
Exon sequences
Seq C1 exon
TTTCTAGGATCACTCGATGGAGGTTGATGTCCATGTTCTTTGGAATAAAATGTCTTTTCTTGATAGTTGCTTTGGGAGTTTTGGTGAAAAATT
Seq A exon
GTAAGTGTTTCTAAGGCAAGTCTATAGAAAAAAATTCAACATTGTGATGAAATAATTTAATAATAAACATCTAATTTCTCTAATGTGCAATATTTTATTTCACAAATACATGTCAAACTAAGCAAATTTATAATAATTTCTTATAG
Seq C2 exon
CATTTACTATACAGAACATTCAATCGACACCTTCTTCAACCCCGATAGTAGAATTCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060246:ENSRNOT00000082064:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGGATCACTCGATGGAGGT
R:
CTTTCTGGAATTCTACTATCGGGGT
Band lengths:
154-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]