HsaINT0093769 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:74394531-74402153:-
Coord C1 exon
chr16:74401963-74402153
Coord A exon
chr16:74394790-74401962
Coord C2 exon
chr16:74394531-74394789
Length
7173 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGTTTGGTTTCTCTGTCTAGTTT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTGCCCGGGGGCCGTAAAGCGCGGAAGGTCGCGGTCTCGGCTTCCCCGGAACTTTTTGCTCGCTTCGCCCCGCCCCCTTCCCATCCCCGAACCCCGCTTTCCGGCCCGCGGCGACCGCCGGCAACTGTTGTGGCTGCCGCATTGCTCCCGCCGGGCTGTAGCTGAGCGCGGAGCCCGTGGGGGCCGGTGAG
Seq A exon
GTAAGGAGATAGCTTCGGGGCAACTCTGGCCTCCCCGTCCGCGCGGGCCTAAGCGCCCCGGGACCCCTGGGTTCCCCTCTTTCTCCTTTGGTTTCGCCCGGGGGTGGTCCCCGCTAGCTCACGCTTCCAGTGGGTTCCGCCTGGCCTCTCGCGAAGTCGCGTCCGGGCGGTAGTACTCGTCCCCGTAAGGTTGTCCGCTCGTGCCTTGGCTTGTGTCCTCGGCTACCCCTGGGCCTGCGCACCGCTCCTCCAGGAGCCTGCACCTCAGCCCCGATGCCAGGGCGGCCGGGGTGACCTCGGGCTCCCCAGTCTTGGGCTTGCACACCCCTGCGGCGCAGAGCCAACTCCAGCTTGTCTAGCCCGGTCCTCCATCCCTGCAGATGGAACTGTTTTCCCGCGTTGAGACGTGCGGTCCGCTTGTGCTTTCAGAACTAGTAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGAAAAGTCTGGGACAGGGCAGTAAGCTTCCTTCTTAATGTTTGACCTTTGGGGGCCGATGTGTGATACCTCGGATTTGAATCAAGAATCTCCAAGCCCATTTTCCGCATGCATGTAAACGTGATGTACCGGGATGGGGGCTGGTGGTGGAGGAGGAGCCAGCCCAACGGATATGCGTTTCCAGTGGCAGGGACTTGTGTTAATTTCTTTTTTCTTTTTTCTTTTTTTTTCTTTTTTCCGAGACGGAGTCTCACTCTGTCGCCCAGGCGGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGAATACAGGTGTGCGCCACCACGCCCGGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCGTGATTCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCAACTTGTGCTAATTTCTTAAACTTGCGTGATCACCTGGTGTACTTGTTGAAAAATACAGCTCCCTGGCGTGGCAGGATCAGAATCTGCCGAGGTGGACCGTGGGAATCTGTCATTTTTAAACAAGTGTCCCAGGTGGTTCTTTTGCTGAGGCAAGTGTGGGAAATGTGTGAACCCACGCTCATCCAGTCTTCCTTGTGACCGGCAGTCCACTGTGCGCAACGCTGCAGCCATACAGAGGGACTACTCGAAGTTAGAACTAGCACCTTGGTCTTGTTGGAATAAGCAGATCTGAGTAGAGCCAGCTGCAGTCTTATGGTTGTTTAGCAGAAGTTATTCTTCTTAGCAGAGAATATTATACGGTCATTTTCCAGAACTGTAAAAACTCTATCATTTGTTTTAAACCAGATGATGTGCTTCATTTCTGTCTTTGACGTCTTCAGTTTCTTCTCCCCTGGCTTTACCTCCTTTGCTATCAGTTTGTGCTTTGGTTTTGCTGCCAACCTTATAGGCTTAGGTTTGGCGGCAAAGGCACTAGACTCTGGTGCCTTCTTTTCCTTCGTTGTCTTAAGCCCTTCTTTTCCTCTGCCCTCATGCCCTCACCACTTCACTCTTTTGAAGGTCATAATGAACACAAGGTCAGAGATCCCTTTTTTGGCGCCAAGCACCCTGGGCTTTTTTGAGATGGAGTCTCACTGTGTCACCCAGGCAGTGGCGCGACTCTGCGCACTGCAGCCTCCATCTCCCTGGTTGAAGCAATTTTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCAAGCCACGACACCTGGCTAATTTTTCTGTTTTTAGTAGAGACGGGGTTTCACCATGCTGATCAGGCTGGTCTCAAACTCCTGACCTCAAATGATCCACCCACCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCCCTGCGCCTGGCCTTTTTTTGTTTTGTTTTGTTTAAGACAGAGTCTCACTGTGTCACCCAGGCAGGAGTGCAGTAGCATAATCTCGGCTCACTGCAACCTCTGTCTCCCAGGCTCAAGCGATCCTCCTACCTCAGGAGTTCAGGACCAGCCTGGGCAACATAGTGAGCCCATCTCTACAAAAAAAAAAAAAAAAATTTAAAAAATTAATAAAACACAAGATTGGCCTGTGTGGTGAGACAGTATTGAATCCAACAAACGGGAACTGGTTAGTGAGGCCCAAGATGCAATGGTGGCCGCACCATGAGTACCTGGGACCACAGGTGCGTGCCACCACACCCAGCTAATTTTTTGTATCTTTGGTAGAGACGGAGTTTCACCATGTTTGCCAGGCTGGTCTCCAATTTCCGACCTCAAATGATCTACCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGACATGGCGCCCGGCCTAAAGTTTTTTTTTAATTCCTCCTTAAAACTCATCTGTTACTGTGTTTGTTCTGCCACCTTTGCAATTCCCTTTCTCTGTTAGGGGAATGTGCTTAATGGTTCAGTCCTCACAGCTGTCCTTTCCTTACCATCTGCTTTTATTTGAAAGGTAGCGTGGAGTCATGATTAAATAGCCGGCCACTAATGCCAAATTGGCAGGGTTCTGCTACTCAACAGTTTGGTAGGACCTTGGGTGAGTCACTTCCACTTATCTGTGCCTGTTTCCTCAAGTGTAGAATAGAAATGCTAGTATCTACCTCATAAGGTTGTGAGGATTAAATTAGTTATATACATAGGCAGTATCTGGTGCATTGTAACTACTTATAAAAATATTAGCTTTAAAAATTATTGGCCGGTCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACTCCATCTCTACTAAAAATACAAAAAATTAGTCGGGCACAGTGGCGTGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCGGGAGAAACACTTGAACCTGGAAGGCAGAGGTTGCAGTGAGCTGAGATCACGCCTCTGCACTTCAGCCTGGGCGACAGAGTGAGACTCTGTTTCACAATAAATAAAAATAAAAATAATTCTCTCAGGTATTTAGATATCTCCTCAAATCTGGGGGTCCTACCTTTGATTTTTTCCCCCCATCTTCTTTGTTCTCTGTTCTCATTCATGCATCAACATATATTTCCTAGGTACCTATGCTGAACGCTGGGAAAATTGAGCAATTTATAAGGTTTCTGCTCTTAGTTCCATTATAATAGGGAAATAATAGGCCGGGTGTGGTGGCTTAGCCTGTAATTCCAGCACTTTGGGAGGCCAATGTGGGCAGATCACTTGAGGTCAGGAGCTCGAGACCATCCTGGGCAACGTAGTGAGACCTCACCTCTACAAATATTCATAATTTTAAAATTAGCTGAGTGTGATGGTACACATCTGTGGTCCCAGCTACTCTGGAGGCTGAGGTGGGAGGATCGCTTGAGTCTGGGTGGTTGAGACTGCAGTGAGCCATGATCATGCCGCTGTACTCCAGCCTGCATGACAGACCTCGTCTCAAAAAATAATAAAAAATAACTACCACTTACTGAGTGCTTCTTAGGTGCTTGTACCATGTTCTTCCTGCCTTGTCTGATTTAGTCTTTGCAGCAACCATGTGAGGTAGGTGTTTCTAGCCCGTGTTACAGATGAGGAGTTCAAAGCCTAGAGATTTAGTAACTTGCTGATAGTCATACAGCTAGTGAGAGGTGGGGATATTTTCAAACCCAGAACTGTCCGCCCCCAAAGCCTGGATTCCCTGCCATGCTGGCATGTTGCTTCTCTGATTGGCAAACAGACCATTGTGCAGTGTGGTAAGTTCTGTGCTGGGAGAAGTGTAGTGTGTTATAGGAGAACATAGAAAAGCCACCTAACCAAGTGTTGGAGAAGGAGGGGGAGATTGTCAGATAAGATGTCAAAGACAGGGCTGGGCACGGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCGGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTCCTAAAAATTAAAAAAAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATCAATCCAGGAGGCAGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCGTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAATAAATAAATAAGATGTCAAAGAGGCTGTGACCTGAGGAGATTACCTGTATTTGCGGGAGGGGTGGCAGGAACCTGCCAGGAGGGAACAGCATGCACAGAACCTGGAGCCGAATAGAACATTCACACCTCACCTGATATGTTTGACGAATTACAGGTTGTTCAGTCTGGCTTGGTCAGAGTGTGAGGAAAGGAGAAATGAGACCACAGATAAGAACCAGACTGTGAAGGATCTTGCACTTGATATGAAAAGAGTTTTGCCTTTTTCCTGAGGGCATCAGAAAGTCATTAAGGTGGGTGTGGTGGCTTACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCCAGTGGATCACCCGAGGTGAGGAGTTCAAAACCAGCCTAATTAACATGGCGAAACCCTATCTCTACTAAAAATACAAAAAGTAGCTGGGCGTGGTGGCGCGTACTTATAGTGCCAGCTGTTCAGGAGGCCGAGGCAGGAGAATTGCTTGAACCTGGAATGTAGAGGTTGCAGTGAGCCGAGATCACACCGCTGCACTCCCAACTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATTGCTGAGGAAAAGGAGCAAAAACGGAGGGAAACATTGCAGGTACAGGAAAGAGAGACAGCAGTTGATGGAGCTAGGGTCAAGAGAAGAGAGGAGGAAGTGGGATCCAGGGCCCTTGGGGGAGATTAACTTTCCAGTGGATAAAAGAAGGAAGAGATGGTTGCAGATGTAAGTGGGTCTATAGGAAGGGTTTCAGGGAATGAGATGAGCCAGGTTATCTGCTTAGAATGAGGGAAGAAAGGAGGTGAAGTTGAAGGTTGAGAGAGGAATAGCTGGGCTCTGAACCTGAATACAGACAGAGGTCTACCTGTGGCTTAACATGTGCTAGCCTAAGCCACCAAGGAGCAGGACAGTTTTCAAGTATAACCGAGTGGTCACGGGTCAGAAGCCAGGAGGTTGACAGTGAGGTCAATGGGATGGGGCTGGCCATTTGGCAGCAGCAGTTCCCCAGGAGAGCTGTGTTGCCATTGGGACAGAGGGTAGAGAGGATGTCAGCAAAGGGGTGGGTGTTTACCTTTGGGAAAGGTATTCTAGAGGGTGCAGTAGAGGAGCTTGAAGGAGAGGAAAGCAAAGAGAGCTTGGGCCACGGGAAATAAATTGGTCACGTAGAGATGAGATTATGTAAAGACTAGCCGGGTAGAGAAGCTTCTGTTTTGAGATGGTGCTTAACAGGGACCAGGGATGAGAGGCATGGTGGCAACCACAAGGTGGCCAAGACAATTTGTCTCCAGTTGGATGGGATGTCTGTCTGGACATAGTCTGTGCTTGCATTGGTTGCAATTCTGATGGATGGACATAGATACCTTGGCCTTGGACAATTTGGGCTGACTGTGGAGCATCTGTGGGTCCTGTGGCTGGCAGTGGAGGCGGTAAGGAGATGACTAGCAGTGAGCTGCCCTGAGGCCCCCTTGTCTACCGCCTCTCGTCTCAAAGTCCTCATCCTCCTGTACACATGACTGCATGGACAGCCAGTAGGTGCTTTCTTCTTCAGTTTCTTGAAACTTGAACAGTCATCTGTTTTGCTGATAGATTAAGTTTGTTAAAACCCTGCCTTGTCCAAGGGCAGTGGTTCATGCCTGTAATCTCAGCACTTTGGGAGACCAAGGTGGGAGGATCACTTGAGCCTAGGAAGTCGACTCTGTTTTTATAATTCTACCATCCGCTCTCCACCATGGAGCCAGACTGACCTTTGGAAAACATCCCCCCACCCCTCACCGCCAAAAAAAACAAAGAAAAGAAAAACATCCCAGATCATTTCATTCCCCTGCTAGTGATACTCCCGCATGAGTGATTTTCCTTTGTACTTTGAATAAAATTCCAACTCCTGCTGATGGCACCCAAGGGCTGTGTGTAACTGGCTTCCGCCTGCCTCTCCAGCATTGTCTTAGATCATCTCCCCACACTCCCCGTGTCGTGTACATGCCGGCCTCCTTTTTGTTCTTGGTCTGTCTTACCTCAGGGCTTTTGCACATGCTCGTCTCAGTGTCTGCCAAATGTATAGCTCGTTCCTTATCCTTCAGGTCTGTTTCCAAATGTCACTTCCTTGGAGGCTGTTTCTGACCATCCTGTTTTAAATATGCCCCTAGTTACTCTATCACATTAGCTTTATTTACTGTTTTATTTGTATGTTTACTTGTATATTGATTGGTGCTCTCCTCATTCACACACGCAAACTCTCAAATGTAAATTTCATAAAGACAGGGACTTCCCCATTCTTGTTCACTGCTAGCAGAATATCTGAAACTCAGAATGCCCTCAAATATTTCTTTTTTTGTTTTTGTTTTTGTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCGGTGGCGCGATCTCTGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACACCTGACCTCGTTATCCACTCGCCGCGGCCTCCCAAAGTGCTGGGATTATAGATGTGAGCCACTGCGCCCAGCCTAATTTTTTGTGTTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAGAGTGCTGGGATTACAGGTGTGAGGCACCGCGCCCGGCCACCCTCAAATATTTGCTGAATGAATGGCTATCGTTCTTTGTCAAATCCCTTTCTCATTAATCCCATGCACTGAGTTGAATGGCATGAAATATGTTTGGTTTCTCTGTCTAG
Seq C2 exon
TTTGAGTTCCTGAGATCTAGTTGGTGAGAGACATGATGTTCTACTGGTTGCTGTCGATTGTTGGAAGACAAAGAGCCAGCCCAGGATGGCAGAACTGGTCCTCTGCAAGAAACAGCGCATCAGCTGCCGAGGCGCGTTCCATGGCCCTGCCCACCCAGGCACAGGTGGTCGTCTGTGGAGGTGGAATCACGGGCACTTCTGTGGCCCATCACCAATCCAAAATGGGGTGGAAGGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC283922:NR_026950:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)