MmuINT0003801 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:113618645-113625990:+
Coord C1 exon
chr8:113618645-113618726
Coord A exon
chr8:113618727-113625713
Coord C2 exon
chr8:113625714-113625990
Length
6987 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GATTTTTTTTTTCTTTCTAGTTC
3' ss Score
9.74
Exon sequences
Seq C1 exon
AGACCCTCTTCAGCGGCTGGGCTGCCCTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGTCGCGGGCCCGTGAG
Seq A exon
GTAGGAAGCCGGCTAGGACCCGCGGGTCCGGGCGGCCTTCTGGTCCCGCGAACTCTTGCGCCCCGCACGCCCCTGGCGTCCGAGCTTTGGGCTCCGGCTCCCGGCCGTCCCTCCGGGTCTCTGAGGCGGTGCCACCGGTCGGGCGCCGGGATTGAGCCAGTGGAGCTGCGCGGGCCTCGGGGAGCCGCGCCCGCCGTCCCGGGACTGCGCGCCGGCTCTCCCAGGGCGGCGGACCGGGCCTCGGGGCGGGCTGCGGCTCGGGCGGGCGCGCGCGCACTGCTGTCACGGCCAGAGGTGGCCCCGCGTCTCTGCAGGTGGAATGGTTTCCCACCTTGTAATGTGCGGCTCGGCTGTGCTTCACCGACTCCTGTCAGAGACCTAGTCAGGGCCGTGGGGTTTCCAGTGGGTGACTTGGGGTGACAGTTGTGTGTGATCCCGAGGTGCGAGTCCACGGTCTCCAAGCCTACTTCGAACATTTATGCAATCTTGATTTGTAGGGATGATGATGTGGTAGAGGGTCTAGTTATAAAGACGTCCTTTAAGGATCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTGTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGTCCGGCCCAAGGGTCCTCTTTTTGGCGTCAGGGACGTGTATAATTTTTCTTAAATTCTCTCAGCCAACGGTGCATTTGTTGAAAATTACAGCATCCTGAACTTGCATGATCAAACTGTTCAGAGGGTCATTCTGTTGCTTGTAAACTTGCCCTGGTGATTCCTCCGAGTTATGTGTGGGAGATGCGTCAATGTACATTCAGCCTTCATTCTTTGTGACCTGTGGCTCATGCTGTTACCAGAGGAAGCATTCAGGAGTTGTTAGAACTGTCCCTGTGACTGCCTTTTAAAGACAGAGTCTTGCTCTGTGGCCCCAGCTCACCTGGAACCTGGGCATTTCTCCTGTTTCAGTATCCAGTGTGGTGGGAATTTCAGGTGTGAGCACTGCTCCAGGATTGAGCTTGTTGGTGTAGGATCCGAGCACAATCAGTCTGGGTCTTAAGGCTGTTTAGAAGTTACTCTTACTAGTAGAGATACCGTTAATTTTCACGAATTTCAAGAAAATGCAAAACTTCCTGACCTTTCCTTTGAATGAGTTTGCAGTCTTCAGTGTCTGTTTTCCTGGCTCTACCTCCTTTTCCTGTGAAACTTGCTTGCTTTTACTGCCAGACCCCTTCATCACATTTTATTTTATGAGTGTTTTGCCTATGTGTACGTTTGTGCACCATGTCCACGCTTGATGTCCACAAAAGTCAAGGCATTGGATTCACTGGAACTGAAGTTAAAGATTGTTACCTCCTTGTGGGAGTTGGGAATCAAACCCAGGCCCTGTGCAAGAACAGTAACGTTCTTAACCACTGAGACATCTCTCTAGCCCTCCCTTCCTGGTATACTTCAGTCTTTTCTGCCCTCATCTCTTCACTCTTGAAGGTCATGATGATCACAGAGTCAACATTCTTTTCTTGGCCTTATCAGACTGGGCATTAAACGTGCTTTGTTCTTTCCTGAATCTCCTGTTTGTCCTTTTCTTCCTGTCTTGCCGAGAGATCATAAGTTTATTGAGCAAACAGTGACAAAGGACTGGGCATGGTAGGGTTTCTCAGGGAGGAATTCTCTGTTATGTTTCTTTCCTGTTGCTATTCTCTTTTCTAGGTAGGGAAAGAGCTTCTGGTACTGCTTTACAGCTGTTTGGCCTTTGCTTACCTGGATTTCTTTGAAGCCCATGCTTTTAATCCCAGCACTGGGGGAGGCAGAGACAGGTGGATTTCTATGAAGTCTAAGCAACCTTGGTCTACATAGCAAGTTCTAGGCCATTTGCTACAAAGTGACACCCTGTCTAGAAAGAAAGGAAGAAAGAGAGAAAGGGAAAAAAGAAAGCAGTAGTAGTATTATGATAAGTGGCTCTGATGCTAGATTTGCAGTTTTGTCTTTGATTATAGAATAATAATTTTACATAATATACTTTATACATAAGTTTCCTAAAGTACAGAACAGAAATTATGTCCACCCTATAGGGTTGTGCTTAGATTAGTTGATACTTAGGAAGTATCTTGCACACTGTAACCACTAACAGAGACCCAAATTCAGGACCTCATCCTTGCACAGCTGCTGCTTTAACCACTGAGCCACCTTCCTCAGCCCTATGTATGTTTATTGAGATAGGGTCTCATTTAGCCTAAACTTTTTGGGGTTTTTTGTTTTTGTTTGTTTGTTTTCTGAGACAGGGATTCTCGGTATAGACCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCTAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTCCCGGCATTAGCCTACACTTGCTACACAGTTTAGGATGATCTTGAATTCCTGCTCTTCTAACTCTACCTTCTCACTGTTGGGATACAGTTGTCTACTGGCCTAGGAGTTCTCATTAATGAGGGAATGATAGTCTTTTTCTCTCTCCCTGTCTCCACTCTTCCATCATCTCTCTCCTTCACCCCACCCTACCCCCAGCTTCTGAGCTTGGCTTTGACATCAGTTACCCTTTTGTATTGTATTGGTTTTTTTGTTTTTTTAATTTACTTTTTTTTTATTAGGTATTTTCCTTGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCCCCCCCTTGTATTGTATTGTTTGATTTAGGCTTTCCACAACCATGTGAGATAGATATTTCTAACCGATGTTAACAGATAGAACCTGGCACACCAAAATGTGGTCAGAGTTGTACAGGTAATGAGATGTAAGGAGACTTGATATCTTGTGTTTGTAGATCTTGGATTCCCCCAGTGGGTTGCTGAATTACTACTTCACTCAAATGCCTTACAGATAATTGGAGAAGAGGAAAAGTTCTGGGAGAAGTAGAATATCCTGGGAGAAAACAGAAGACTCCTTTACTCAAAGGCTACACTGTCAGATTGGTATAGAATAGGCCGTGTTCTGAGGAGGTAGCTTTGCTCAGTAGACAAGTGGCAGGAACTTTGCCAGCTAGAGAGACAGTGCCCACAGGTCCAGGGCATAGAAGAGAGAGTTAAGCCTGACTTGTTTGAGGGGTGGAGGTGGGGAGAATGAATATGAGAATGTATAGCGGGGCGGGGAGAAGAGGGAAGAGACCAGAATGATTGGCTTATATAGGAAAGAGCCTCTGGGGAAGGGGAATCCCAGCCTCTGGGTTGGGCAGTTAAGATAGAAGACAGGCTATGCCAGGTAGGGACTGAGGGATGCTACGAGGGTTAAATATTCCCCTCAGCTGTTTGTTCCAGATCTGAATCCCAATAAATACATCATAGACTTGCTCACAGGTTAATCTGATGGGACGTTTTCTCAGTTGAGGTTCCCCCTTCCCATAGACTCTGGCTTGTGTCAAGTTGATATAAAACCATCCAGCCCAAGGGTCTTTCACAAGCATGACCAAGTGGCAATGGTTGATAATGGAATAAGATGGCCAGACAGTAGAACAGGTAAGATAATTCTCCAGTTGAGAGTTGTGTTTCCATTGCAGGTGGAGAGAATGTTAGTAAAGGGGTGTGTATTTAACTTAGAAATGTAGCCTAGAGGGCCTTGTGGAGAATTTAAGGTGAGGTTGGGCAATAGAAAGTTTTATGAAGATGAGACTTCAGAAAACTGCTCATGTAGAGAAGTTTGTATCTTTGTTTTTGTTTTTTGTTTTTGGTCTTGGATTGTTTTGAGACATGGTTATATGGATCCCAGGTTGTTCTGCAATTCAGAATCCTGCTTTAGCTTCCCAAGTGCTGGGTCTTAGTTGTGTGTTGCTAGACCAGACTGACACCCTTCAGATAGAACCTCATAGGAAGCAGAAATAATAACTGATTTCCACTTGCATGAGATTTCTCTCTACACCCTGTCTGCCAAGATTGTAGTTCTGAGCACTAAGAGAGATGGCCAGTTAAGAGTATTAGCTGTTCTTAGAGGGCCGTGCTTTGATTCTCAGCACCCATAGGGTGGCTCACAACCATTTGTAACTCCAGTCCTAGTGGATCTGACACCCTATCCTGACCTCCTCAGGGACCACACATACATATGGCACACAGATATACATGCAGACAGAATATATGTATGTGTGCAATATATCTTTTTTTAAAAAAAGATTGCAGTTCTGAGAGTCCTCTCTGATAGTGTGTGTGTGTGTGTGTCTTTGGGCTTAGAGGACATAGACCAATGGGGAGTCTAAGTCCAGATGCTGGTGGTGGAGGTGGCGGCAGCTTTATTGCCCTGATTCCCACATATCTGCCACCCTGTGTCTTAATCTCTTTAATGCTGGCGTAGTCTGCCAGTAGGTCAGCCTTTAGTTTCTTGAGACTTGACAGTATTCCTGTTAGATTTTTGCCAAAATCCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAGACAGGGTTTCTCTGTATAGCTCTGGTTGTCCTGGAACTCACTTTTTTGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTAGTATTAAAGGCGTGCGCCACCATGCCCAGCTAAAACCCTGCTTTTTAAATTTTCAGCCAGTAGTGACTTCTTGTTTACTGGACCATGCCAGATCAAATATTCAGAGTCCCTTGTGGTTGGGTTCTTCCTTTAGTTCCTGTACTTGAGTCTGTATTACCGTCCTAAGTCAGATCTGTTCTGTTGTCTTTAGTATGTGTGTTTTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTTTTCCTTTTCTTTTCTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCCTTTTCTTTTTCTTTAAAGATTTATTTAACTAGGCAGCGGTGGCGAACGCCTTTAATCCTAGCACTCGGGAGGCAGAGACAGGTGGATTTCTGATTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCAACCACCACCACCACCCCCCCAAAAAAAAGGATTTATTTATTTATTATATGTGAGTACACTATAGTTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTACGGATGGTTGTGAGTCACCTTTGGAAGAGCAGTTAGTGGTCTTAACCAGTGAGCCATCTCTCCAGCCCCTGTTTTCTATGTCTTTGTCTCTGTCCAAACATCACCCCTCCAAGGCTCAACTTACATCCTACTTTCAGTATGATTCTTTCCAGCCATTACCTTTTTCTTTAGCCTATTAGATTTATTATCTTGTAGAACTATGTACGACTTGTGTGTAAACAATAAGATAAAACCCCTTTCCTTCTTTCCATGAAAAAGTGTCTAATATTTGAACCTCTATGCTTGCCTCTTTCACTGGGCTCTGGGTCTCGCCTCTTGTCTTCCTAAGCACTCCATGCTTTGTTAATGCATTTTTCTGGCTCTTCAGCTGCATTATTCACACCAGAAGTGGAACATTCTCTTTGTTTGAGACAAGTCTCTCTTTGTTGTCAAGGTGCTTTGAACTTGAGATCTTCCTGCCTCAGCCTCTGGAGTGCTGGGATCACATGTGTGCATCATCATGAGTGGCTGAATTCTGTCCTTTCTGCTTCCAGAACAATATGTTCATTTTCCTGACTTATCTGCCGTGTTCAGTCTCAGCCACTGTGATGCTGGACTGCTGGAGGATCTTCCTTTCTCATCTTTTTCTTTCACTCACCATCCTCTCTCCACCGTGGAGCCAGACTGACCTTTGAAAATCATGCACGATCATTTGATTCCCTTGCTTTAGTGATTTTGTTTGTTTGTTTATTATGGCATTCAAGTATTATAGAATTGACTCCTGCCTGTTTTTCTCAGGCTTAAGCATTTTCCCTTCCATCACTATATCGTAGCCCCTGCCTTCATTTTTTTTTTTTTGGTTTGTCTTATTTAAGGGTCTTTCCATATACTTACCGTTCTGTCTAAATATTCATATAGCTGTTTTCTTTTCATCTGCCGATGTTATTGCCATGCCTCACCTTCCTGACCGTCCCACTGCTCTTCCTTATTCTTTTTTTTTAATGGATAATAGGTGTTGAACTCAGGTTATAAGGCCCCATTTCAAAGTGCCTTCACTTACTAAGCCCTTACATTTCTTTCTGTCTATGTCTGTCTGTTTCTATCTTTAGACAAGATCGCCGACCCCAGCTGGCCCTGAAATCCCAGTGTAGCGGAGGATGACCTTGAACTTCTGCGGAGCCTCCTGTACTCACTTTAGGTCTATAGGCTTGTGCTGCTATCTTCCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTTGTTTTTGAGACTTGGTCTCTTTGTAGTCCTGGCTGTCCTAGAAATCTCTATGTAGACCAGGATGGCCTTGAACTCACAGAGATCCTACCTCCAGGGTGCTGGGAATAAAGGCATGTGCCACCATGTCTGGCTTTTTTTTTTTTTTTTTTTTTAAAGCAGAATTTGGAACATAGGTTTTCAAATATATGTCGCATAAAGGGCTATTGTTCTATGTTAAATCTTTTTCTCATTAGTCCTGAGAACGGACTTACATGGAATGATTTTTTTTTTCTTTCTAG
Seq C2 exon
TTCATATTCTTTGGATCTTCTCAGCTGAGTGAAAACGTATCTTCCAGGTGGTGATGCTTTACCGGTTGCTCTCTATTGTGCAAAGACAAAGGACTAGCCCAGGATGGCAGACCTGGTCATCAGCGAGAAGCAGCACGTCCACTGCGGAGGCACATTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGAGGTGGAATCATGGGTACATCCGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-4930402E16Rik:NM_198308:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: