MmuINT0003801 @ mm10
Intron Retention
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111094641-111102090:+
Coord C1 exon
chr8:111094641-111094826
Coord A exon
chr8:111094827-111101813
Coord C2 exon
chr8:111101814-111102090
Length
6987 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GATTTTTTTTTTCTTTCTAGTTC
3' ss Score
9.74
Exon sequences
Seq C1 exon
GCGGGCCGTAAAGCGCGGAAGGTCGCAGGCCCCCCGCGGTCCCGGAACTCTGCGCTCCGCGTCCCGCCCCGTCCCCATGCCCTGGCCCCCTTTCCGGCCGGCGCAGACCCTCTTCAGCGGCTGGGCTGCCCTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGTCGCGGGCCCGTGAG
Seq A exon
GTAGGAAGCCGGCTAGGACCCGCGGGTCCGGGCGGCCTTCTGGTCCCGCGAACTCTTGCGCCCCGCACGCCCCTGGCGTCCGAGCTTTGGGCTCCGGCTCCCGGCCGTCCCTCCGGGTCTCTGAGGCGGTGCCACCGGTCGGGCGCCGGGATTGAGCCAGTGGAGCTGCGCGGGCCTCGGGGAGCCGCGCCCGCCGTCCCGGGACTGCGCGCCGGCTCTCCCAGGGCGGCGGACCGGGCCTCGGGGCGGGCTGCGGCTCGGGCGGGCGCGCGCGCACTGCTGTCACGGCCAGAGGTGGCCCCGCGTCTCTGCAGGTGGAATGGTTTCCCACCTTGTAATGTGCGGCTCGGCTGTGCTTCACCGACTCCTGTCAGAGACCTAGTCAGGGCCGTGGGGTTTCCAGTGGGTGACTTGGGGTGACAGTTGTGTGTGATCCCGAGGTGCGAGTCCACGGTCTCCAAGCCTACTTCGAACATTTATGCAATCTTGATTTGTAGGGATGATGATGTGGTAGAGGGTCTAGTTATAAAGACGTCCTTTAAGGATCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTGTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGTCCGGCCCAAGGGTCCTCTTTTTGGCGTCAGGGACGTGTATAATTTTTCTTAAATTCTCTCAGCCAACGGTGCATTTGTTGAAAATTACAGCATCCTGAACTTGCATGATCAAACTGTTCAGAGGGTCATTCTGTTGCTTGTAAACTTGCCCTGGTGATTCCTCCGAGTTATGTGTGGGAGATGCGTCAATGTACATTCAGCCTTCATTCTTTGTGACCTGTGGCTCATGCTGTTACCAGAGGAAGCATTCAGGAGTTGTTAGAACTGTCCCTGTGACTGCCTTTTAAAGACAGAGTCTTGCTCTGTGGCCCCAGCTCACCTGGAACCTGGGCATTTCTCCTGTTTCAGTATCCAGTGTGGTGGGAATTTCAGGTGTGAGCACTGCTCCAGGATTGAGCTTGTTGGTGTAGGATCCGAGCACAATCAGTCTGGGTCTTAAGGCTGTTTAGAAGTTACTCTTACTAGTAGAGATACCGTTAATTTTCACGAATTTCAAGAAAATGCAAAACTTCCTGACCTTTCCTTTGAATGAGTTTGCAGTCTTCAGTGTCTGTTTTCCTGGCTCTACCTCCTTTTCCTGTGAAACTTGCTTGCTTTTACTGCCAGACCCCTTCATCACATTTTATTTTATGAGTGTTTTGCCTATGTGTACGTTTGTGCACCATGTCCACGCTTGATGTCCACAAAAGTCAAGGCATTGGATTCACTGGAACTGAAGTTAAAGATTGTTACCTCCTTGTGGGAGTTGGGAATCAAACCCAGGCCCTGTGCAAGAACAGTAACGTTCTTAACCACTGAGACATCTCTCTAGCCCTCCCTTCCTGGTATACTTCAGTCTTTTCTGCCCTCATCTCTTCACTCTTGAAGGTCATGATGATCACAGAGTCAACATTCTTTTCTTGGCCTTATCAGACTGGGCATTAAACGTGCTTTGTTCTTTCCTGAATCTCCTGTTTGTCCTTTTCTTCCTGTCTTGCCGAGAGATCATAAGTTTATTGAGCAAACAGTGACAAAGGACTGGGCATGGTAGGGTTTCTCAGGGAGGAATTCTCTGTTATGTTTCTTTCCTGTTGCTATTCTCTTTTCTAGGTAGGGAAAGAGCTTCTGGTACTGCTTTACAGCTGTTTGGCCTTTGCTTACCTGGATTTCTTTGAAGCCCATGCTTTTAATCCCAGCACTGGGGGAGGCAGAGACAGGTGGATTTCTATGAAGTCTAAGCAACCTTGGTCTACATAGCAAGTTCTAGGCCATTTGCTACAAAGTGACACCCTGTCTAGAAAGAAAGGAAGAAAGAGAGAAAGGGAAAAAAGAAAGCAGTAGTAGTATTATGATAAGTGGCTCTGATGCTAGATTTGCAGTTTTGTCTTTGATTATAGAATAATAATTTTACATAATATACTTTATACATAAGTTTCCTAAAGTACAGAACAGAAATTATGTCCACCCTATAGGGTTGTGCTTAGATTAGTTGATACTTAGGAAGTATCTTGCACACTGTAACCACTAACAGAGACCCAAATTCAGGACCTCATCCTTGCACAGCTGCTGCTTTAACCACTGAGCCACCTTCCTCAGCCCTATGTATGTTTATTGAGATAGGGTCTCATTTAGCCTAAACTTTTTGGGGTTTTTTGTTTTTGTTTGTTTGTTTTCTGAGACAGGGATTCTCGGTATAGACCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCTAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTCCCGGCATTAGCCTACACTTGCTACACAGTTTAGGATGATCTTGAATTCCTGCTCTTCTAACTCTACCTTCTCACTGTTGGGATACAGTTGTCTACTGGCCTAGGAGTTCTCATTAATGAGGGAATGATAGTCTTTTTCTCTCTCCCTGTCTCCACTCTTCCATCATCTCTCTCCTTCACCCCACCCTACCCCCAGCTTCTGAGCTTGGCTTTGACATCAGTTACCCTTTTGTATTGTATTGGTTTTTTTGTTTTTTTAATTTACTTTTTTTTTATTAGGTATTTTCCTTGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCCCCCCCTTGTATTGTATTGTTTGATTTAGGCTTTCCACAACCATGTGAGATAGATATTTCTAACCGATGTTAACAGATAGAACCTGGCACACCAAAATGTGGTCAGAGTTGTACAGGTAATGAGATGTAAGGAGACTTGATATCTTGTGTTTGTAGATCTTGGATTCCCCCAGTGGGTTGCTGAATTACTACTTCACTCAAATGCCTTACAGATAATTGGAGAAGAGGAAAAGTTCTGGGAGAAGTAGAATATCCTGGGAGAAAACAGAAGACTCCTTTACTCAAAGGCTACACTGTCAGATTGGTATAGAATAGGCCGTGTTCTGAGGAGGTAGCTTTGCTCAGTAGACAAGTGGCAGGAACTTTGCCAGCTAGAGAGACAGTGCCCACAGGTCCAGGGCATAGAAGAGAGAGTTAAGCCTGACTTGTTTGAGGGGTGGAGGTGGGGAGAATGAATATGAGAATGTATAGCGGGGCGGGGAGAAGAGGGAAGAGACCAGAATGATTGGCTTATATAGGAAAGAGCCTCTGGGGAAGGGGAATCCCAGCCTCTGGGTTGGGCAGTTAAGATAGAAGACAGGCTATGCCAGGTAGGGACTGAGGGATGCTACGAGGGTTAAATATTCCCCTCAGCTGTTTGTTCCAGATCTGAATCCCAATAAATACATCATAGACTTGCTCACAGGTTAATCTGATGGGACGTTTTCTCAGTTGAGGTTCCCCCTTCCCATAGACTCTGGCTTGTGTCAAGTTGATATAAAACCATCCAGCCCAAGGGTCTTTCACAAGCATGACCAAGTGGCAATGGTTGATAATGGAATAAGATGGCCAGACAGTAGAACAGGTAAGATAATTCTCCAGTTGAGAGTTGTGTTTCCATTGCAGGTGGAGAGAATGTTAGTAAAGGGGTGTGTATTTAACTTAGAAATGTAGCCTAGAGGGCCTTGTGGAGAATTTAAGGTGAGGTTGGGCAATAGAAAGTTTTATGAAGATGAGACTTCAGAAAACTGCTCATGTAGAGAAGTTTGTATCTTTGTTTTTGTTTTTTGTTTTTGGTCTTGGATTGTTTTGAGACATGGTTATATGGATCCCAGGTTGTTCTGCAATTCAGAATCCTGCTTTAGCTTCCCAAGTGCTGGGTCTTAGTTGTGTGTTGCTAGACCAGACTGACACCCTTCAGATAGAACCTCATAGGAAGCAGAAATAATAACTGATTTCCACTTGCATGAGATTTCTCTCTACACCCTGTCTGCCAAGATTGTAGTTCTGAGCACTAAGAGAGATGGCCAGTTAAGAGTATTAGCTGTTCTTAGAGGGCCGTGCTTTGATTCTCAGCACCCATAGGGTGGCTCACAACCATTTGTAACTCCAGTCCTAGTGGATCTGACACCCTATCCTGACCTCCTCAGGGACCACACATACATATGGCACACAGATATACATGCAGACAGAATATATGTATGTGTGCAATATATCTTTTTTTAAAAAAAGATTGCAGTTCTGAGAGTCCTCTCTGATAGTGTGTGTGTGTGTGTGTCTTTGGGCTTAGAGGACATAGACCAATGGGGAGTCTAAGTCCAGATGCTGGTGGTGGAGGTGGCGGCAGCTTTATTGCCCTGATTCCCACATATCTGCCACCCTGTGTCTTAATCTCTTTAATGCTGGCGTAGTCTGCCAGTAGGTCAGCCTTTAGTTTCTTGAGACTTGACAGTATTCCTGTTAGATTTTTGCCAAAATCCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAGACAGGGTTTCTCTGTATAGCTCTGGTTGTCCTGGAACTCACTTTTTTGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTAGTATTAAAGGCGTGCGCCACCATGCCCAGCTAAAACCCTGCTTTTTAAATTTTCAGCCAGTAGTGACTTCTTGTTTACTGGACCATGCCAGATCAAATATTCAGAGTCCCTTGTGGTTGGGTTCTTCCTTTAGTTCCTGTACTTGAGTCTGTATTACCGTCCTAAGTCAGATCTGTTCTGTTGTCTTTAGTATGTGTGTTTTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTTTTCCTTTTCTTTTCTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCCTTTTCTTTTTCTTTAAAGATTTATTTAACTAGGCAGCGGTGGCGAACGCCTTTAATCCTAGCACTCGGGAGGCAGAGACAGGTGGATTTCTGATTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCAACCACCACCACCACCCCCCCAAAAAAAAGGATTTATTTATTTATTATATGTGAGTACACTATAGTTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTACGGATGGTTGTGAGTCACCTTTGGAAGAGCAGTTAGTGGTCTTAACCAGTGAGCCATCTCTCCAGCCCCTGTTTTCTATGTCTTTGTCTCTGTCCAAACATCACCCCTCCAAGGCTCAACTTACATCCTACTTTCAGTATGATTCTTTCCAGCCATTACCTTTTTCTTTAGCCTATTAGATTTATTATCTTGTAGAACTATGTACGACTTGTGTGTAAACAATAAGATAAAACCCCTTTCCTTCTTTCCATGAAAAAGTGTCTAATATTTGAACCTCTATGCTTGCCTCTTTCACTGGGCTCTGGGTCTCGCCTCTTGTCTTCCTAAGCACTCCATGCTTTGTTAATGCATTTTTCTGGCTCTTCAGCTGCATTATTCACACCAGAAGTGGAACATTCTCTTTGTTTGAGACAAGTCTCTCTTTGTTGTCAAGGTGCTTTGAACTTGAGATCTTCCTGCCTCAGCCTCTGGAGTGCTGGGATCACATGTGTGCATCATCATGAGTGGCTGAATTCTGTCCTTTCTGCTTCCAGAACAATATGTTCATTTTCCTGACTTATCTGCCGTGTTCAGTCTCAGCCACTGTGATGCTGGACTGCTGGAGGATCTTCCTTTCTCATCTTTTTCTTTCACTCACCATCCTCTCTCCACCGTGGAGCCAGACTGACCTTTGAAAATCATGCACGATCATTTGATTCCCTTGCTTTAGTGATTTTGTTTGTTTGTTTATTATGGCATTCAAGTATTATAGAATTGACTCCTGCCTGTTTTTCTCAGGCTTAAGCATTTTCCCTTCCATCACTATATCGTAGCCCCTGCCTTCATTTTTTTTTTTTTGGTTTGTCTTATTTAAGGGTCTTTCCATATACTTACCGTTCTGTCTAAATATTCATATAGCTGTTTTCTTTTCATCTGCCGATGTTATTGCCATGCCTCACCTTCCTGACCGTCCCACTGCTCTTCCTTATTCTTTTTTTTTAATGGATAATAGGTGTTGAACTCAGGTTATAAGGCCCCATTTCAAAGTGCCTTCACTTACTAAGCCCTTACATTTCTTTCTGTCTATGTCTGTCTGTTTCTATCTTTAGACAAGATCGCCGACCCCAGCTGGCCCTGAAATCCCAGTGTAGCGGAGGATGACCTTGAACTTCTGCGGAGCCTCCTGTACTCACTTTAGGTCTATAGGCTTGTGCTGCTATCTTCCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTTGTTTTTGAGACTTGGTCTCTTTGTAGTCCTGGCTGTCCTAGAAATCTCTATGTAGACCAGGATGGCCTTGAACTCACAGAGATCCTACCTCCAGGGTGCTGGGAATAAAGGCATGTGCCACCATGTCTGGCTTTTTTTTTTTTTTTTTTTTTAAAGCAGAATTTGGAACATAGGTTTTCAAATATATGTCGCATAAAGGGCTATTGTTCTATGTTAAATCTTTTTCTCATTAGTCCTGAGAACGGACTTACATGGAATGATTTTTTTTTTCTTTCTAG
Seq C2 exon
TTCATATTCTTTGGATCTTCTCAGCTGAGTGAAAACGTATCTTCCAGGTGGTGATGCTTTACCGGTTGCTCTCTATTGTGCAAAGACAAAGGACTAGCCCAGGATGGCAGACCTGGTCATCAGCGAGAAGCAGCACGTCCACTGCGGAGGCACATTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGAGGTGGAATCATGGGTACATCCGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624:ENSMUST00000039333:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.093
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(8.9=42.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types