RnoINT0109324 @ rn6
Intron Retention
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43142438-43149210:-
Coord C1 exon
chr19:43149028-43149210
Coord A exon
chr19:43142668-43149027
Coord C2 exon
chr19:43142438-43142667
Length
6360 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGAAAACATATATCTTCCAGGTG
3' ss Score
7.81
Exon sequences
Seq C1 exon
CGGGCCGTAAAGCGCGGAAGGTCGCGGGCCCCTGCGGTCCCGGAACTTTGCGCTCTGCGTCCCGCCCCCTCCCCATGCCCTGTCCCCTTTCCGGCCCGCACAGACCCTCTTCAGCGGCTGTGCTGCCCTTCACTTCCGCCGGGCGTTGTTGAGCTCGCTGCCCGCAAGTTGCGGGCCCTTGAG
Seq A exon
GTAGGAAGCCGGCTAGGACCTGCGGGTCCGGGCGCCCCGCACGCCCTGTTGTCTGAGCTATGGCCTCTGGCTCCCGGTTATTCCTCCGGGTCTCTGAGGCGGTGCCACGGGTCCGGCGCCAGAATTCAGCCAGCGGAGCTGTGAGGGCCTCGGGAACCGGTGTCTGCCACCCCGGGCCTGCGCGCCGGCTCTCCTGGGCGGTCGGGCCTCGGGGCTGGCTGCGGCTCGGGCGGGCTCGCACCTGCTGTCACGGTCAGCTGTCACCGCATCTCTGCAGGTGGAAAGGTTTCCCACCTCGAAACGTGCGGTTTGGCTGCGCTTTACCAACTCCTGTCAGAGACTGAGGGCGGTGGGGTTTCCAGTGTCTTGGGGTGATTGTTGTGTATATTTCCGAGGTTCGAGTCCACGGTCTCCAAGCCTACTTCAAACATTTATGCGATTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGACATTTATGCGATCTTGATGTGTAGGGATAGTGATGTGGTCGAGGGTCCTTTAAGGGTCCTCTTTTTGGCGATAGGGAGGTATCATTTTCTCAAACTCTCTTGAGCATTGGTGCATTTGTTGAAAAATACTGTTCAGAGGCTGATTCTTTTGCTTTAAAACTTGCCGTGGTGACCCTGAGTTATGTGTGGGGGATTCAGCCTTCATTCTTTGTGACCTGCGGCTCATGCTGTTATCAGAGGAAGAATTCAGTTGTTCGAACTGTCACTGTTATTGTCTTTTAAAGATAGAATCTTGCACTGTGGCCCCGGCTCACCCGGAACCTGGGACATTTTTCCTGATTCAGTATCCAGTGGTGGGAGTTACAGGTGTGAGTACTGCTCCAGGATTGGGCGCCACCTTGTTGGTGTAATATCTGAGTGCAATCAGTCTGGGTCTTAAGGCTGTTTAGAAGTTACTCTTACTAGTAGAGATACAGTTAATTTTCACGAATTTCAAGAAAATACCGAATTTCCTGACGTTTTATTTGGAATGAGTTTGCCTTCTTCAGTGTCTATTTTTCTGGTTCTACCTCCTTTTCCTGTGAAACTTGCCTGGTTTTACTGCCAGACCTTCAGGAGTAGAATCTAATAACTTCTCTTCCTGGTGTAAATTTTTCTTTTTAAAACTACCTTAAAATGAATATATATTCATTTTATTTTATGAGTGTTTTGCCTATGTTTGTGCACCATGTGCATTTTTGATGGCCACAAAAATCAGAAGAGGGCATCGGATTCACTGGAACTGAAGTTAAAGATTGTGAACTCTATGTGGGATTTGGGAATTGAACCCAGGCCCTCTGCAAGAACAGTAAGTGCTCTTAGCCACTGAGACATCTCTCTAGCCCTCTCTTCCTGGTGTACTTCAATCTTTTCTGCCCTCATCTCTTCACTCTTGAAGGTCATGATGATCACAGAGTCAAGTCTTTTCTTAGCCTTATCAGCCTGGGCATTAAACATGCATTGTTCTTGTCTGAAACTGCTGTTTGTTCTTTTCTTTCTCTCTTGGTGAGTGAGCATACCTTTATTGGGGAAAAAGTGACAGAGACCTGGAGAATGAGAGGGGTTCTGAAGGAGGGATTCTCTGTTATGTTTCTTTCCCTTTGCTGTTCAATCTTTCCAGCTAGGGAAAAAGCTTCTGGTTCTGCTTCACAGAAAGCTGGGTTTCTTTGAAATGCAGTTTGAGCAGGCCCATGCCTTTAATCCCAGCACTGGGGCAGGCAGAGACAGGTGGATTTCTGTGAGGTCTAAGCCATCTTGGTCTACATAGCAAATTCTAGGCCATTTGCTATAAGGCGACACTCTGTCTCATAAAGGAAAAAAGAAAGAGAAAAGAAATCTGTAGCAGTATTAATTATGATAATTGATAGGTTCTGATGCTAGATTTGCAGTTTAGTCTTTGATTACAGAGCAGTCATTTTCCATTTTCCATTTTCCATTATGGAAGACTGTTCACCCATGCCTGTGTATGGCCTGAGGTCTGTGGGAGCAAGGTGTGCACTAAAAGTAGAAACTAGAAGCCTAGAAGCCTCCACATATGTTGGCAGGGGGTTTGGAGAGAAGTTGGTGGATGGGTGTGAGATCTAGGATGTAGACTGGACAGGGAAGATCCTGAGAAATGACTGGAGAAGAGAGATGAGAAAAGTAGAAACCAGGTGACACTCTGGATTCCAGTTTGAGGAGCCCTGGGGGACATACACTGTGTGGGAGGGTGAAGGCTGAGGTGTTTGCATACGGATGTGCTGGGTTTTACCTGTGGGATCAAGTGGGTGTGGCCACTCTGCACTTGATAAACAGATCTGAAGCTCAGGGGGCAGGATTCTTGGGTCAGGCCATGCATCATTCCCAGAGTGACACTAAAATCACCTGGGGAGAGATGGGAAGGCTCAGGGTAGAAGGCTCCAGCAAAGAGTTATGACCCAGGACCTATAGAGGTGAAACTAGGAAGCAGAGTGGTCTGTGGTCTTAGTGGTGTGGTATGTGAGAGAGAGATCCTCTAAAACCAGCATATTGGGTGTTTTTAGTGAGGGAAGTATAGTGCTGCGGTAGGGCCAAAGTCCTGTTTTTGTTACAAGGGGATGTTTTCTGTTTAATAATTTACTGTCAAGTGAAAGATGGGTTCTTGAAAGTCTTATTAGTCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAGACAGGCTCTCACTATATAATCCTGGCTGTGTAGACCAGGCTGGCCTGACTCTGCTGGGATTAAAGATGTGGTGCCATCATGCCCAGCATAAATTTTTTGTTTGTTTGTTTGTTTTTTTCTCTTTTTTCTTTTTTTTTCAGATCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCAATTTGTTTTATTTTTAATATAGTGCTGCTATGAAACACAAGGTCTCAAGTTCAGGCAATAGTTTGTTCTGTGTCAACAAATTTACTTACCTAAGGGTTCGGGTTGTGGTTTTTTTTGTTTGTTTGTTTATTTATTTATTTATTTATTTATTTTTGAGATATGCTCTCTCTATGTAGCCCTTATTATCTTGGAACTCATTATGTTGAGCAGGCTGAACTCAAACAAAAGAGATCCAGAGATCTGCTTGCCTCTGCCTCTTGAGTACTGAGAATAAGGTGTATGGCCACCACTTTTTTTTTTTTTTTAGTTCTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGTAAGCACTTACCACTGAGCTAAATCCCCAGACCCATGGCCACCACTTTTATCCTCAAGGATACATTTTTGTTTAAAAGCTTCATTTGGGGATTGGAGAGATGGCTCAGTGCTTAAGAGCACTGGCGGCTCTTCCAAAGTGCTTAGGTTAAATTCCCAGCACCCATATGGTATCAACAACAGTCTGTAACTTCAGTTCCAAGTGAGCCTGGTGGCCTTTCTTGGCTTCCTTGAACACTGCATACACGTAGTGCACAGACAGATATTTAAGCAAAACACTCATATACATAAAACAGGCAAAGTGGTAGAGCTTGGGCAGTGGTGCACTTTGGGATGTGGATGTGGGAAGGTCAGGAGTTCAAGGTCGTGCTTGGTTACATAGTCTAGGATATTTGAGAGTTTTGTCTCAAAAGAACAAGGACGGGGCTTTAAGTTATAGGTCCTTAAAGTTACATAAAGATGAGACTTCAGGAAACTGTTTCAGTCCTAGTGAATCTGACACCCAATTCTGACCTCAGGGACCATGCACACGTATGGTATACAGATATGCAGACAGAACACTCACACACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGTGGTTTGGTCTTTTTTCTTTTCTTTTTTTTTTTTTTTTTCCTTTTTTTCGGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTTTACCGCTGAGCTAAATCCCCAACCCCTCCCGTGTGGTTTGGTCTTAGAGGACTTGAACCAATGGGGAGTCTAAGTACAGATGCTGGTAGTGGGGGTGGTGGCGGCTTTATTGGCAGTGTGTTGCCCTGATTCCCACATATCTGCCACCCTGTGTCTTAAGCTCTTTAATGCTGGCGTAGTCTGCCAGTAGGTCAGCCTTTAGTTTCCTGAGAGTTAACAGTATTCCTGTTAGATTTTTGTCAAAACACTACCTTTTTTGTTTTCTTTTTTCTTTTTTTTTTTTTCCCTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCACCTTTTTTGTTTTCAATCAGTAATGACTGCTTGTTTACTGGACCACGCTGATCAAATACTCAGAGTCTCTTGTGGTTGGGTTCTTCAGTTCCTGTACCCAGCATTTCCCTGGCTCTTCTGCTGCATTATCCACACCAGAACTGGAACATTCTCTTTGGTTTGAGATAAATCTCTCTATTGCCAACGTTTGCCTTGAACTTGAGCTCTTCGTGCCTCAGCCTCTGGCTTGCTGGCATCACATGTGTGCACCATCATGACTGGCTGAATTCTGTCATTCCTGCTTCCAGAACAATGTGTGTATTTTTCTGACTTACCTGCCATGTTCGGTCTAAGCCATTGTGTATGCTTGAACTGCTGTAGTATCTTCCTTTCTCATCCTTTTCCTTCATTCACCATCTACTCCCCACCATGGAGGCAGACTGACCTCCGAAAAACATGCAGGTCACTTGATTCCCTTGCTTCAGTGATTTTGTTTGTGTGTTTGTTGTGGCATTCAAGTACTGTAGAATTGATTCCCGCCTGTTTTTCTCAGGGTTATCTTAATCATTTCCCTTCCATCACTGTACTGCAGCCACTGCCTTCCTTTTTTTTGGAGGGGTGGGGCTCGTCAAATTGGTTTGTCTTCCTACATATATTGATCCTTCAGACTAAGCATATTATATAGCTGCTTACTTTCCATCTGCCAGTGTTGTTCCCATGCCTCATCTTCCTAACCTTCCCCTGGGCCTCCTTATTCCTTCTTTTTTTTTTTTTAAATGGGTTAATAGGTGTTGAACTCAGGTTTTAAGGCCCCTAGGCAAAGTGCCTTCACTTACGAAGCCATCTCATTGGTTTTCTTTTTTTTTTTTTCCTCTTTATCTTTTTAAAAAAATTTTAAAAATATTTATTTATTTATTTATTTATTTTTTTTTTTTGGTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAAAAATATTTATTTTTATATGAGTATACTCTTGCTGTTTTCAGACACACCAGAAGGAGGGCATCAGATCTGATTTCAGATGGTTGTGAACCACCATATGGTTGCTGAGAATTGAACTTAGGACCACTGGAAGAGCAGTCAGTGTGCCCTTAACCACTAAGCCATCTCTCCAGTCCCATCTCATTGGTTCTTATTCTATGAATTCTTATTTCTGTCTATGTCTCTCTCTTCAGTATCTATCTTTAGACAGGATTTCCAATCCAAGCTGGCCTAGAAATCACAGTGTAGCTGAGGACGACCTTGAACTTCTGGGGAATCCTCCTATCTCCACTTTTCAAGCCTGTGTTGCTAGGCTAAGTTTAGATCTCTCTTTCTAGATCTCGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTTATTTTATGTAGGAGTACACTGTCTCTGGCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGACGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGATGAGCCACCTCTCCAGCCCCCAGTTTAGAGTTCTTTGTGCTTGTTTTTTGTTTGCCTTTGTCTGTGGGTGTGGGTGTGTGGTTTTTTGAGACAGTGTCTCTTTGTAGTTCTGGATGTCCTGGAAATCTCTACTTGGACCAGGCTGGCTTTGAACTCACAGAGATCTGCTTACATCTACCTACAGAGTACTAAGTGCTAAGATTAAAGGCATGTGTCACCATGCCTGACTTTATTTAAACAGAATTTGAAACAGGTCTTCAAATATATGTCAAATGAAGGGCTATTGTTCTTTGTTAAATCTTTTTCTCATTAGTCCCAAGAACTGACTTACATGTAATGATTTTTTTTTCTTTCTAGTTGTATTTTTGGATCTTAGCTGAGTGAAAACATATATCTTCCAG
Seq C2 exon
GTGGTGATGCTTTACCGGTTGCTGTCTATTGTCCAAAGACAAAGAACTAGCCCAGGATGGCAGACCTGGTCATCGGCAAGAAGCAGCACGTCCGCTGCCGAGGCGCAGTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGGGGTGGAATCATGGGTACGTCTGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593:ENSRNOT00000038452:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(39.0=42.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]