HsaINT0122641 @ hg19
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:30264]
Coordinates
chr16:70148724-70154622:+
Coord C1 exon
chr16:70148724-70148833
Coord A exon
chr16:70148834-70154363
Coord C2 exon
chr16:70154364-70154622
Length
5530 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
3' ss Seq
TGTTTGGTTTCTCTGTCTAGTTT
3' ss Score
7.69
Exon sequences
Seq C1 exon
ATGGAACTGTTTTCCCGCGTTGAGACGTGCGGTCCGCTTGTGCTTTTAGAACTAAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGAAAAATCTGGGACAGGGCA
Seq A exon
GTAAGCTTCCTTCTTAATGTTTGACCTTTGGGGGCCGATGTGTGATACCTCGGATTTGAATCAAGAATCTCCAAGCCCATTTTCCGCATGCATGTAAACGTGATGTACCGGGATGGGGTCTGGTGGTGGAGGAGGAGCCAGCCTGACGGATAAGCTTTTCCAGTGGCAGGGACTTGTGTTAATTTCTTTTTTCTTTTTTTTTCTTTTTTCCGAGACAGAGTTTCACTCTGTCGCCCAGGCGGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGAATACAGGTGTGCGCCACCACGCCCGGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATTCTCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCTCGGCCAACTTGTGTTAATTTCTTAAACTTGCGTGATCACCTGGTGTACTTGTTGAAAAATACAGCTCCCTGGAGTGGCAGGATCAGAATCTGCCGAGGTGGACCGTGGGAATCTGTCATTTTTAAACAAGTGTCCCAGGTGGTTCTTTTGCTGAGGCAAGTGTGGGAAATGTTGTGTGAACCCACGCTCATCCAGTCTTCCTTGTGACCGGCAGTCCACTGTGCGCAACGCTGCAGCCATACAGAGGGACAACTCGAAGTTAGAACTAGCACCTTGGTCTTGTTGGAATAAGCAGATCTGAGTAGAGCCAGCTGCAGTCTTATGGTTGTTTAGCAGAAGTTATTCTTCTTAGCAGAGAATATTATACGGTCATTTTCCAGAACTGTAAAAACTCTATCATTTGTTTTAAACCAGATGATGTGCTTCATTTCTGTCTTTGACGTCTTCAGTTTCTTCTCCCCTGGCTTTACCTCCTTTGTTATCAGTTTGTGCTTTGGTTTTGCTGCCAACCTTATAGGTTTAGGTTTGGCGGCAAAGGCACTAGACTCTGGTGCCTTCTTTTCCTTCGTTGTCTTAAGCCCTTCTTTTCCTCTGCCCTCATGCCCTCACCACTTCACTCTTTTGAAGGTCATAATGAACACAAGGTCAGAGATCCCTTTTTTGGCGCCAAGCACCCTGGGCTTTTTTGAGATGGAGTCTCACTGTGTCACCCAGGCAGTGGCGCGAATCTGCCCACTGCAGCCTCCATCTCCCTGGTTGAAGCAATTTTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCAAGCCACGACACCTGGCTAATTTTTCTGTTTTTAGTAGAGACGGGGTTTCACCATGCTGATCAGGCTGGTCTCAAACTCCTGACCTCAAATAATCCACCCACCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCCCTGCGCCTGGCCTTTCTTTGTTTTGTTTTGTTTAAGACAGAGTCTCACTGTGTCACCCAGGCAGGAGTGCAGTAGCATAATCTCGGCTCACTGCAACCTCTGTCTCCCAGGCTCAAGCGATCCTCCTACCTCAGGAGTTCAGGACCAGCCTGGGCAACATAGTGAGCCCCTCTCTACAAAAAAAAAAAAAAAATTAAAAAAATTAATAAAACACAAGATTGGCCTGTGTGGTGAGAGAGTATTGAATCCAACAAACGGGAACTGGTTAGTGAGGCCCAAGATGCAATGGTGGCCGCACCATGAGTACCTGGGACCACAGGTGCGTGCCACCACACCCAGCTAATTTTTTGTATCTTTGGTAGAGACGGGGTTTCACCATGTTTGCCAGGCTGGTCTCCAACTTCCGACCTCAAATGATCTACCCGCCTCGGCCTCCCAAAGTGCTGAGATAACAGGCGTGAGACATGGCGCCCGGCCTAAAGTTTTTTTTTTAATTCCACCTTAAAACTCATCTGTTACTGTGTTTGTTCTGCCACCTTTGCAATTCCCTTTCTCTGTTAGGGGAATGTGCTTAATGGTTCAGTCCTCACAGCTGTCCTTTCCTTACCATCTGCTTTTATTTGAAAGGTAGCGTGGAGTCATGATTAAATAGCCGGCCACTAATGCCAAATTGGCAGGGTTCTGCTACTCAACAGTTTGGTAGGACCTTGGGTGAGTCACTTCCACTTATCTGTGCCTGTTTCCTCAAGTGTAGAATAGAAATGCTAGTATCTACCTCATAAGGTTGTGAGGATTAAATTAGTTATATATATAGGCAGTATCTGGTGCATTGTAACTACTTATAAAAATATTAGCTTTAAAAATTATTTGCCGGTCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCGGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTCCTAAAAATTAAAAAAAAAAATTAGCCAGGCATGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATCAACCCAGGAGGCAGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAATAAATAAGATGTCAAAGAGGCTGTGACCTGAGGAGATTACCTGTATTTGGGGGAGAGGTGGCAGGAACCATGCCAGGAGGGAACAGCATGCACAGAACCTGGAGCCGAATAGAACACTCACGCCTCACCTGATATGTTTGACGAATTACAGGTTGTTCAGTCTGGTTTGGTCAGAGTGTGAGGAAAGGAGAAATGAGACCACAGATAAGAACCAGAGTGTGAAGGATCTTGCACTTGATATGAAAAGAGTTTTGCCTTTTTCCTGAGGGCATCAGAAAGTCATTAAGGTGGGTGTGGTGGTTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCCAGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTAATCAACATGGTGAAACCCTGTCTGTACTAAAAATACAAAAAGTAACTGGGCGTGGTGGCGCGTGCTTGTAGTTCCAGCTGTTCAGGAGGCCGAGGCAGGAGAATTGCTTGAACCTGGGATGCAGAGGTTGCAGTGAGCCGAGATCACACCGCTGCACTCCCAGCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAATTGCTGAGGAAAAGCAGCAAAAAGGGAGGGAAACGTTGCAGGTACATGAAAGAGAGATAGCAGTTGATGGAGCTAGGGTCAAGAGAAGAGAGGAGGAAGTGGGATCCAGGGCCCTTGGGGGAGATTAACTTTCCAGTGGATAAAAGAAGGAAGGAAGAGATGGTTGCAGATGCAAGTGGGTCTATAGGAAGGGTTTCAGGGAATGAGATGAGCCAGGTTATCTGCTTAGAATGAGGGAAGAAAGGAGGTGAAATTGAAGGTTGAGAGAGGAATAGCTGGGCTCTGAACCTGAATACAGACAGAGGTCTGCCTGTGGCTTAACATGTGCTAGCCTAAGCCACCAAGGAGCAGGACAGTTTTCAAGTATAACCGAGTGGTCACGGGTCAGAAGCCAGGAGGTTGACAGTGAGGTCAATGGGACGGGGCTGGCCATTTGGCAGCAGCAGTTCCCCAGGAGAGCTGTGTTGCCATTGGGACAGAGGGTAGAGAGAATGTCAGCAAAGGGGTGGGTGTTTACCTTTGGGAAAGGTATTCTGGAGGGTGCAGTAGAGGGGCTTGAAGGAGAGGAAAGCAAAGAGAGCTTGGGCCACGGGAAATAAATTGGTCACGTGGAGATGAGATTATGGAAAGACTAGCCGGGTAGAGAAGCTTCTGTTTTGAGATGGTGCTTAACAGGGACCAGGGATGAGAGGCATGGTGGCAACCACAAGGTGGCCAAGACAATTTGTCTCCAGTTGGATGGGATGTCTGCCTGGACACAGTCTGTGCTTGCATTGGTTGCAATTCTGAGAGTCATCTCTGATGGATGGACATAGATACCTTGGCCTTGGACAATTTGTGCTGACTGTGGAGCATCTGTGGGTCCTGTGGCTGGCAGTGGAGGCGGTAAGGAGATGACTAGCAGTGAGCTACCCTAAGGCCCCCTTGTCTACCGCCTCTCGTCTCAAAGTCCTCATCCTCCTGTACACATGACTGCATGGACAGCCAGTAGGTGCTTTCTTCTTCAGTTTCTTGAAACTTGAACAGTCATCTGTTTTGCTGATAGATTAAGTTTGTTAAAACCCTGCCTTGTCCAAGGGCAGTGGTTCATGCCTGTAATCTCAACACTTTGGGAGACCAAGGTGGGAGGATCACTTGAGCCTAGGAAGTCAACTCTGTTTTTCTTATAATTCTACCATCCGCTCTCCACCATGGAGCCAGACTGACCTTTGGAAAACATCCCCCAACCCCCCACCGCCAAAAAAAACAAAGAAAAGAAAAACATCCCAGATCATTTCATTCCCCTGCTAGTGATACTCCCGCATGAGTGATTTTCCTTTGTACTTTGAATAAAATTCCAACTCCTGCTGATGGCACCCAAGGGCTGTGTGTAACTGGCTTCCGCCTGCCTCTCCAGCATTGTCTTAGATCATCTCCCCACACTCCCCGTGTCGTGTACATGCCGGCCTCCTTTTTGTTCTTGGTCTGTCTTACCTCAGGGCTTTTGCACATGCTCGTCTCAGTGTCTGCCAAATGTATAGCTCGTTCCTTATCCTTCAGGTCTGTTTCCAAATGTCACTTCCTTGGAGGCTGTTTCTGACCATCCTGTTTTAAATATGCCCCTAGTTACTCTATCATGTTAGCTTTATTTACTGTTTTATTTGTATGTTTATTTGTATATTGATTGGTGTTCTCCTCATTCACACACGCAAACTCTCAAATGTAAATTTCATAAAGACAGGGACTTCCCCATTCTTGTTCACTGCTAGCAGAATATCTGAAACTCAGAATGCCCTCAAATATTTCTTTTTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCGGTGGCGCGATCTCTGCTCGCTGCAGCCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGTAAGACTGGTCTCGAACCCCTGACCTCGTTATCCACTCGCCGCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCAGCCTAAGTTTTTGAATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGGTGTGAGGCACCATGCCCAGCCACCCTCAAATATTTGCTGAATGAATGGCTATCGTTCTTTGTCAAATCCCTTTCTCATTAATCCCATGCACTGAGTAGAATGGCATGAAATATGTTTGGTTTCTCTGTCTAG
Seq C2 exon
TTTGAGTTCCTGAGATCTAGTTGGTGAGAGACATGATGTTCTACCGGTTGCTGTCGATTGTTGGAAGACAAAGAGCCAGCCCAGGATGGCAGAACTGGTCCTCTGCAAGAAACAGCACGTCAGCTGCCGAGGCGCGTTCCATGGCCCTGCCCACCCAGGCACAGGTGGTCATCTGTGGAGGTGGAATCACGGGCACTTCTGTGGCCTATCACCTCTCCAAAATGGGGTGGAAGGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857-PDPR:NM_017990:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(8.9=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)