HsaINT1026584 @ hg38
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr16:70114821-70120719:+
Coord C1 exon
chr16:70114821-70114930
Coord A exon
chr16:70114931-70120460
Coord C2 exon
chr16:70120461-70120719
Length
5530 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
3' ss Seq
TGTTTGGTTTCTCTGTCTAGTTT
3' ss Score
7.69
Exon sequences
Seq C1 exon
ATGGAACTGTTTTCCCGCGTTGAGACGTGCGGTCCGCTTGTGCTTTTAGAACTAAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGAAAAATCTGGGACAGGGCA
Seq A exon
GTAAGCTTCCTTCTTAATGTTTGACCTTTGGGGGCCGATGTGTGATACCTCGGATTTGAATCAAGAATCTCCAAGCCCATTTTCCGCATGCATGTAAACGTGATGTACCGGGATGGGGTCTGGTGGTGGAGGAGGAGCCAGCCTGACGGATAAGCTTTTCCAGTGGCAGGGACTTGTGTTAATTTCTTTTTTCTTTTTTTTTCTTTTTTCCGAGACAGAGTTTCACTCTGTCGCCCAGGCGGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGAATACAGGTGTGCGCCACCACGCCCGGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATTCTCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCTCGGCCAACTTGTGTTAATTTCTTAAACTTGCGTGATCACCTGGTGTACTTGTTGAAAAATACAGCTCCCTGGAGTGGCAGGATCAGAATCTGCCGAGGTGGACCGTGGGAATCTGTCATTTTTAAACAAGTGTCCCAGGTGGTTCTTTTGCTGAGGCAAGTGTGGGAAATGTTGTGTGAACCCACGCTCATCCAGTCTTCCTTGTGACCGGCAGTCCACTGTGCGCAACGCTGCAGCCATACAGAGGGACAACTCGAAGTTAGAACTAGCACCTTGGTCTTGTTGGAATAAGCAGATCTGAGTAGAGCCAGCTGCAGTCTTATGGTTGTTTAGCAGAAGTTATTCTTCTTAGCAGAGAATATTATACGGTCATTTTCCAGAACTGTAAAAACTCTATCATTTGTTTTAAACCAGATGATGTGCTTCATTTCTGTCTTTGACGTCTTCAGTTTCTTCTCCCCTGGCTTTACCTCCTTTGTTATCAGTTTGTGCTTTGGTTTTGCTGCCAACCTTATAGGTTTAGGTTTGGCGGCAAAGGCACTAGACTCTGGTGCCTTCTTTTCCTTCGTTGTCTTAAGCCCTTCTTTTCCTCTGCCCTCATGCCCTCACCACTTCACTCTTTTGAAGGTCATAATGAACACAAGGTCAGAGATCCCTTTTTTGGCGCCAAGCACCCTGGGCTTTTTTGAGATGGAGTCTCACTGTGTCACCCAGGCAGTGGCGCGAATCTGCCCACTGCAGCCTCCATCTCCCTGGTTGAAGCAATTTTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCAAGCCACGACACCTGGCTAATTTTTCTGTTTTTAGTAGAGACGGGGTTTCACCATGCTGATCAGGCTGGTCTCAAACTCCTGACCTCAAATAATCCACCCACCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCCCTGCGCCTGGCCTTTCTTTGTTTTGTTTTGTTTAAGACAGAGTCTCACTGTGTCACCCAGGCAGGAGTGCAGTAGCATAATCTCGGCTCACTGCAACCTCTGTCTCCCAGGCTCAAGCGATCCTCCTACCTCAGGAGTTCAGGACCAGCCTGGGCAACATAGTGAGCCCCTCTCTACAAAAAAAAAAAAAAAATTAAAAAAATTAATAAAACACAAGATTGGCCTGTGTGGTGAGAGAGTATTGAATCCAACAAACGGGAACTGGTTAGTGAGGCCCAAGATGCAATGGTGGCCGCACCATGAGTACCTGGGACCACAGGTGCGTGCCACCACACCCAGCTAATTTTTTGTATCTTTGGTAGAGACGGGGTTTCACCATGTTTGCCAGGCTGGTCTCCAACTTCCGACCTCAAATGATCTACCCGCCTCGGCCTCCCAAAGTGCTGAGATAACAGGCGTGAGACATGGCGCCCGGCCTAAAGTTTTTTTTTTAATTCCACCTTAAAACTCATCTGTTACTGTGTTTGTTCTGCCACCTTTGCAATTCCCTTTCTCTGTTAGGGGAATGTGCTTAATGGTTCAGTCCTCACAGCTGTCCTTTCCTTACCATCTGCTTTTATTTGAAAGGTAGCGTGGAGTCATGATTAAATAGCCGGCCACTAATGCCAAATTGGCAGGGTTCTGCTACTCAACAGTTTGGTAGGACCTTGGGTGAGTCACTTCCACTTATCTGTGCCTGTTTCCTCAAGTGTAGAATAGAAATGCTAGTATCTACCTCATAAGGTTGTGAGGATTAAATTAGTTATATATATAGGCAGTATCTGGTGCATTGTAACTACTTATAAAAATATTAGCTTTAAAAATTATTTGCCGGTCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCGGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTCCTAAAAATTAAAAAAAAAAATTAGCCAGGCATGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATCAACCCAGGAGGCAGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAATAAATAAGATGTCAAAGAGGCTGTGACCTGAGGAGATTACCTGTATTTGGGGGAGAGGTGGCAGGAACCATGCCAGGAGGGAACAGCATGCACAGAACCTGGAGCCGAATAGAACACTCACGCCTCACCTGATATGTTTGACGAATTACAGGTTGTTCAGTCTGGTTTGGTCAGAGTGTGAGGAAAGGAGAAATGAGACCACAGATAAGAACCAGAGTGTGAAGGATCTTGCACTTGATATGAAAAGAGTTTTGCCTTTTTCCTGAGGGCATCAGAAAGTCATTAAGGTGGGTGTGGTGGTTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCCAGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTAATCAACATGGTGAAACCCTGTCTGTACTAAAAATACAAAAAGTAACTGGGCGTGGTGGCGCGTGCTTGTAGTTCCAGCTGTTCAGGAGGCCGAGGCAGGAGAATTGCTTGAACCTGGGATGCAGAGGTTGCAGTGAGCCGAGATCACACCGCTGCACTCCCAGCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAATTGCTGAGGAAAAGCAGCAAAAAGGGAGGGAAACGTTGCAGGTACATGAAAGAGAGATAGCAGTTGATGGAGCTAGGGTCAAGAGAAGAGAGGAGGAAGTGGGATCCAGGGCCCTTGGGGGAGATTAACTTTCCAGTGGATAAAAGAAGGAAGGAAGAGATGGTTGCAGATGCAAGTGGGTCTATAGGAAGGGTTTCAGGGAATGAGATGAGCCAGGTTATCTGCTTAGAATGAGGGAAGAAAGGAGGTGAAATTGAAGGTTGAGAGAGGAATAGCTGGGCTCTGAACCTGAATACAGACAGAGGTCTGCCTGTGGCTTAACATGTGCTAGCCTAAGCCACCAAGGAGCAGGACAGTTTTCAAGTATAACCGAGTGGTCACGGGTCAGAAGCCAGGAGGTTGACAGTGAGGTCAATGGGACGGGGCTGGCCATTTGGCAGCAGCAGTTCCCCAGGAGAGCTGTGTTGCCATTGGGACAGAGGGTAGAGAGAATGTCAGCAAAGGGGTGGGTGTTTACCTTTGGGAAAGGTATTCTGGAGGGTGCAGTAGAGGGGCTTGAAGGAGAGGAAAGCAAAGAGAGCTTGGGCCACGGGAAATAAATTGGTCACGTGGAGATGAGATTATGGAAAGACTAGCCGGGTAGAGAAGCTTCTGTTTTGAGATGGTGCTTAACAGGGACCAGGGATGAGAGGCATGGTGGCAACCACAAGGTGGCCAAGACAATTTGTCTCCAGTTGGATGGGATGTCTGCCTGGACACAGTCTGTGCTTGCATTGGTTGCAATTCTGAGAGTCATCTCTGATGGATGGACATAGATACCTTGGCCTTGGACAATTTGTGCTGACTGTGGAGCATCTGTGGGTCCTGTGGCTGGCAGTGGAGGCGGTAAGGAGATGACTAGCAGTGAGCTACCCTAAGGCCCCCTTGTCTACCGCCTCTCGTCTCAAAGTCCTCATCCTCCTGTACACATGACTGCATGGACAGCCAGTAGGTGCTTTCTTCTTCAGTTTCTTGAAACTTGAACAGTCATCTGTTTTGCTGATAGATTAAGTTTGTTAAAACCCTGCCTTGTCCAAGGGCAGTGGTTCATGCCTGTAATCTCAACACTTTGGGAGACCAAGGTGGGAGGATCACTTGAGCCTAGGAAGTCAACTCTGTTTTTCTTATAATTCTACCATCCGCTCTCCACCATGGAGCCAGACTGACCTTTGGAAAACATCCCCCAACCCCCCACCGCCAAAAAAAACAAAGAAAAGAAAAACATCCCAGATCATTTCATTCCCCTGCTAGTGATACTCCCGCATGAGTGATTTTCCTTTGTACTTTGAATAAAATTCCAACTCCTGCTGATGGCACCCAAGGGCTGTGTGTAACTGGCTTCCGCCTGCCTCTCCAGCATTGTCTTAGATCATCTCCCCACACTCCCCGTGTCGTGTACATGCCGGCCTCCTTTTTGTTCTTGGTCTGTCTTACCTCAGGGCTTTTGCACATGCTCGTCTCAGTGTCTGCCAAATGTATAGCTCGTTCCTTATCCTTCAGGTCTGTTTCCAAATGTCACTTCCTTGGAGGCTGTTTCTGACCATCCTGTTTTAAATATGCCCCTAGTTACTCTATCATGTTAGCTTTATTTACTGTTTTATTTGTATGTTTATTTGTATATTGATTGGTGTTCTCCTCATTCACACACGCAAACTCTCAAATGTAAATTTCATAAAGACAGGGACTTCCCCATTCTTGTTCACTGCTAGCAGAATATCTGAAACTCAGAATGCCCTCAAATATTTCTTTTTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCGGTGGCGCGATCTCTGCTCGCTGCAGCCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGTAAGACTGGTCTCGAACCCCTGACCTCGTTATCCACTCGCCGCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCAGCCTAAGTTTTTGAATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGGTGTGAGGCACCATGCCCAGCCACCCTCAAATATTTGCTGAATGAATGGCTATCGTTCTTTGTCAAATCCCTTTCTCATTAATCCCATGCACTGAGTAGAATGGCATGAAATATGTTTGGTTTCTCTGTCTAG
Seq C2 exon
TTTGAGTTCCTGAGATCTAGTTGGTGAGAGACATGATGTTCTACCGGTTGCTGTCGATTGTTGGAAGACAAAGAGCCAGCCCAGGATGGCAGAACTGGTCCTCTGCAAGAAACAGCACGTCAGCTGCCGAGGCGCGTTCCATGGCCCTGCCCACCCAGGCACAGGTGGTCATCTGTGGAGGTGGAATCACGGGCACTTCTGTGGCCTATCACCTCTCCAAAATGGGGTGGAAGGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857:ENST00000288050:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(10.6=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains