HsaINT0095034 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:233389017-233389554:+
Coord C1 exon
chr2:233389017-233389079
Coord A exon
chr2:233389080-233389447
Coord C2 exon
chr2:233389448-233389554
Length
368 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
GGCCTCTCCTCTTCCTCCAGGCT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GATCGCGGGCTGCAGGCACTCGGTTCCCGAAGCGGAGGCCGGAGCCGCGCGGAGAAGCCAACG
Seq A exon
GTAATGACGCCCCCTGCCGACCTTCAGGAGGGGATAGGCTGAGGGCCTGGACGAGGTCGGAAGCGCTTCTACTGCAGCTCCGGAAAGGGCTTACCCCATGGGGCAACAGGGTGGACTCGTTCTCCCCTCCCCGCCATAGAGCGTATGACTCTTTTGGAGTACTTGTGGTTTTAGCTCTCATCAGTGTCAAACAGAGATGCTTTGCCTGGTGTTACTGCTTAACTTCTCCGAGCCTCAGTTTCCCCACCTATAGCATAAGAGGATAAGTGTGTCCCCTGGGAGGCCATCCTGAGGTGCTGGTGGGAGTGCCACCCCCAGTTCCATACCGCAACCGTTCATTATTCCCGGGGCCTCTCCTCTTCCTCCAG
Seq C2 exon
GCTGCCCTGGGCTGGAGCCCCTGCGACAGAAGTTGGCTGCCCTGCAGGGGGCCCATGCCTGGATCCTGCAGGTCCCCTCGGAGCACCTGGCCATGAACTTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC646960:NM_001195129:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)