GgaINT1022736 @ galGal4
Intron Retention
Gene
ENSGALG00000004463 | PRSS56
Description
protease, serine, 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr9:15074312-15075257:+
Coord C1 exon
chr9:15074312-15074424
Coord A exon
chr9:15074425-15075135
Coord C2 exon
chr9:15075136-15075257
Length
711 bp
Sequences
Splice sites
5' ss Seq
ATGGGGAGC
5' ss Score
0.62
3' ss Seq
CCCCTCCACCTCTCTCCTATTTC
3' ss Score
-0.77
Exon sequences
Seq C1 exon
GCAGCTGCCCACCTTCAGGGAGTTTTTTGGGTCTGTGGGGCCGCGGCTGCAGGACTGGGTGCAGGCTCTGAGGGCCACGGCGGGGGGCAGCGCCCAGGCACCCACCCCAGATG
Seq A exon
GGGAGCAGCTCCCTGAGGAGACATGGCTCTTCTTACAGGTACTTGGAGAGAAATGGGCTGAGGGGAACACTGCTCCTATGACGGTGCCAGCAGGGTCCATACCCCTGTCTTACCCTATGGGTGCCCCACTGTCTGCACTGTCCCCCTCCCCTTCCCTGCAGCAGGGTGAGGAGCTGGTGGAGGAGCTGCTGGGACAGGGCAGAGCCTTCCTCACCCAGCTCCGGGCAGAGCTGGACCTTGACACCTCCTTGGAGGTCATGCAGACACCTGGAGAGCCAACCGGAGGGCCAGTAGGGAACCCCGTGCTGAACTGTGAGTCCTGGGAAGTTGGGAGGGGGGGCTGATGGTAGGGTGTGGGGCTGATCAGGTATGGGGCTGCTGGGATATGTGTGGGGTTGGTGGAGCACGGGGGTATCCAGCACCAATCTCCATGCCCAGGCATTGCTCACTGAGAGCATCACCAATTATGTTTTTGTGCAGGGTCAGTGCTGAGGGAGAAACGAGAGCTGGTGCCCACAGTGCCAGGGCTGGAGGAAGAGGAGGGGGAGAAGGCAGGTACAGGCAGAGGTAAGCACCCTGCAACACCTGTGCTGTGTGATCCTATGGGGGTGGTGACAAACCCAACCTCAGCATTGCACCCCAGCCCTGGGGCTGGCTGCAGCGCGGTGCCCCCACACACCCCCTGACGCCCCCCCTCCACCTCTCTCCTAT
Seq C2 exon
TTCCCCCCGCTGCAGCTTGCCCCGGCCTCAACGCCTCCGCACTGCGGGTTGGCGTGGTGCAGGAGCTCTACGCCTGGGTGCTGCAGGTGCCACAGCCAGACCTGGCCATGACCTTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463:ENSGALT00000007102:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCCCACCTTCAG
R:
CTCCTGGAAGGTCATGGCCAG
Band lengths:
235-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]