HsaINT1028255 @ hg38
Intron Retention
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232524307-232524844:+
Coord C1 exon
chr2:232524307-232524369
Coord A exon
chr2:232524370-232524737
Coord C2 exon
chr2:232524738-232524844
Length
368 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
GGCCTCTCCTCTTCCTCCAGGCT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GATCGCGGGCTGCAGGCACTCGGTTCCCGAAGCGGAGGCCGGAGCCGCGCGGAGAAGCCAACG
Seq A exon
GTAATGACGCCCCCTGCCGACCTTCAGGAGGGGATAGGCTGAGGGCCTGGACGAGGTCGGAAGCGCTTCTACTGCAGCTCCGGAAAGGGCTTACCCCATGGGGCAACAGGGTGGACTCGTTCTCCCCTCCCCGCCATAGAGCGTATGACTCTTTTGGAGTACTTGTGGTTTTAGCTCTCATCAGTGTCAAACAGAGATGCTTTGCCTGGTGTTACTGCTTAACTTCTCCGAGCCTCAGTTTCCCCACCTATAGCATAAGAGGATAAGTGTGTCCCCTGGGAGGCCATCCTGAGGTGCTGGTGGGAGTGCCACCCCCAGTTCCATACCGCAACCGTTCATTATTCCCGGGGCCTCTCCTCTTCCTCCAG
Seq C2 exon
GCTGCCCTGGGCTGGAGCCCCTGCGACAGAAGTTGGCTGCCCTGCAGGGGGCCCATGCCTGGATCCTGCAGGTCCCCTCGGAGCACCTGGCCATGAACTTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412:ENST00000449534:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains