RnoINT0118817 @ rn6
Intron Retention
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94282831-94283314:+
Coord C1 exon
chr9:94282831-94282893
Coord A exon
chr9:94282894-94283207
Coord C2 exon
chr9:94283208-94283314
Length
314 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
TGGAGCTCCCCTTCTTGCAGGCT
3' ss Score
7.71
Exon sequences
Seq C1 exon
GATCCCGAGTTGCAGGAGCTTGGTTCCAGAAGCCAAAGCAGGAGCGGCGCGCGGAAACGAAGG
Seq A exon
GTAATGCCGCCCCCTGCCGGTCGCTGAAAGGGAACGGCCCAGAGGCGGTTTCTAGAAAGGTGGTGGTAGGATTGTCTGCTAGAAAATTCCAAATCGCAACAGAAAAGACCCTCTCACTCCCTCTCCTCCAAGAAAACAGATTCCTTTTTAAGGAGACATGTGGCACCGAGCCCTTGTTGGTATTCTGCCTAGCATGATCACAGAACCTCTGCCAGCCTCAGTTTCCCCATCTAGACCACGCAGAGGATACTGGGCCCTGGGATATCCCTCTGCTGTCAATGTTTTCATAGTCTGTGGAGCTCCCCTTCTTGCAG
Seq C2 exon
GCTGCCCTGGACTGGAGCCACTGCAACAGAAGTTGGCGGCTATTCAGCGAGCACACGCTTGGATTCTACAGATCCCAGCTGAGCATTTGGCCATGAACTTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865:ENSRNOT00000065805:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]