MmuINT1027560 @ mm10
Intron Retention
Gene
ENSMUSG00000036480 | Prss56
Description
protease, serine 56 [Source:MGI Symbol;Acc:MGI:1916703]
Coordinates
chr1:87187146-87187602:+
Coord C1 exon
chr1:87187146-87187208
Coord A exon
chr1:87187209-87187495
Coord C2 exon
chr1:87187496-87187602
Length
287 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
GGGATCTCCCCTTCTTGCAGGCT
3' ss Score
8.45
Exon sequences
Seq C1 exon
GATCGCGAATTGCGGGAACCTGGCTCCAGAAACCAAAGCCGGAGCGGCGCCCGGAAACAAAGG
Seq A exon
GTAATGTCGCCCCCTACCGGCCTGCTGGAGAGGAGCGGCCAAGAGGCTGTTTCTAGAGAGAAGCTGGGATTGTCTGCTAGAAAATTCCAAATGACAACAGAGAAAACCGGCGCTCACTCCCTCTCTTCCAGGAAAACAGATTCCTTTTTAGGGAGACATGTGGCACTAAGTCCTTGATGGTGTCAGAGGCACACAGCCTTGCATGATCACGAAACCTCTGCCAGCCTCAGTTTCCCCATCTAGAGCACACAGTTCTCTCATAGTCTGGGGATCTCCCCTTCTTGCAG
Seq C2 exon
GCTGCCCTGGGCTGGAGCCTCTGCAACAGAAGTTAGCGGCTATTCAGCGAGCGCATGCTTGGATCCTACAGATCCCAGCTGAGCACTTGGCCATGAACTTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036480:ENSMUST00000044533:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGCTCCAGAAACCAA
R:
AAGTTCATGGCCAAGTGCTCA
Band lengths:
148-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types