HsaINT0095037 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:233386526-233386870:+
Coord C1 exon
chr2:233386526-233386576
Coord A exon
chr2:233386577-233386680
Coord C2 exon
chr2:233386681-233386870
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACCCCTTGCCCCTTTCTAGGGC
3' ss Score
10.13
Exon sequences
Seq C1 exon
GATCTGGGCGCCCCAGGCCTCAAGCTCTCCTCCAGGACCCACCTGAGCCAG
Seq A exon
GTGAGGTTGAAAAGGCTCGAGGGGGCAGGCCTGAGAGCCGGGTGGGCCTCGAAGGCGAGGATGGCCAGAACATGTCCCTCGTGACACCCCTTGCCCCTTTCTAG
Seq C2 exon
GGCCGTGCGGCGAGAGGCGTCCGAGCACTGCCAATGTGACGCGGGCCCACGGCCGCATCGTGGGGGGCAGCGCGGCGCCGCCCGGGGCCTGGCCCTGGCTGGTGAGGCTGCAGCTCGGCGGGCAGCCTCTGTGCGGCGGCGTCCTGGTAGCGGCCTCCTGGGTGCTCACGGCAGCGCACTGCTTTGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC646960:NM_001195129:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCCTCAAGCTCTCCTC
R:
CCGTGAGCACCCAGGAGG
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)