MmuINT1027563 @ mm10
Intron Retention
Gene
ENSMUSG00000036480 | Prss56
Description
protease, serine 56 [Source:MGI Symbol;Acc:MGI:1916703]
Coordinates
chr1:87184603-87184942:+
Coord C1 exon
chr1:87184603-87184656
Coord A exon
chr1:87184657-87184752
Coord C2 exon
chr1:87184753-87184942
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
CGCCGTTTCTGCCATTCTAGTAC
3' ss Score
6.23
Exon sequences
Seq C1 exon
GACCTGGACGCCCTAGACCTCAAGCCCCCCTCCTCCAGGACCCACCGGAGCCAG
Seq A exon
GTGAAACTAAAAGACTCCAAGGGCTGAAAGCGAGGTGGGCCTCAACGTGAAGATAACTAAAACTTTTGCTTCATGACGCCGTTTCTGCCATTCTAG
Seq C2 exon
TACAATGTGGAGAAAGACATCAAGGCGTTGCCAACACGACCCGGGCTCACGGCCGCATAGTCGGTGGCAGCACGGCTCCCTCGGGGGCCTGGCCTTGGCTAGTGAGGCTGCAACTTGGAGGGTTGCCTCTGTGCGGGGGTGTCCTGGTAGCAGCATCCTGGGTGCTCACGGCTGCACATTGCTTCGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036480:ENSMUST00000044533:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGCCCTAGACCTCAAG
R:
CAAGTTGCAGCCTCACTAGCC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types