RnoINT0118820 @ rn6
Intron Retention
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94280265-94280602:+
Coord C1 exon
chr9:94280265-94280321
Coord A exon
chr9:94280322-94280412
Coord C2 exon
chr9:94280413-94280602
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATGACGCCGTTTCTGCCTAGGTC
3' ss Score
7.51
Exon sequences
Seq C1 exon
GACCTGGACGCCCTAGGCCTCAAGCCTCGGTCTTCCAGGACCCACCACCAGAGCCAG
Seq A exon
GTGAGACCAAAAAGGCTCCAAGGAGAGAGCGAGGTGGGCCTCAATGTGAAGACAACTAAAACGTTTCCTTCATGACGCCGTTTCTGCCTAG
Seq C2 exon
GTCCATGTGGAGAAAGACGCCAAAGCGTTGCCAACACGACCCGGGCTCACGGCCGCATAGTCGGTGGCAGCACGGCTCCATTGGGAGCCTGGCCTTGGCTAGTGAGGCTGCAACTTGGGGGCCTGCCTCTGTGCGGGGGCGTTCTGGTGGCAGCGTCCTGGGTGCTCACGGCTGCACACTGCTTCGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865:ENSRNOT00000065805:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGACGCCCTAGGC
R:
CCCAAGTTGCAGCCTCACTAG
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]