HsaINT0095627 @ hg19
Intron Retention
Gene
ENSG00000198670 | LPA
Description
lipoprotein, Lp(a) [Source:HGNC Symbol;Acc:6667]
Coordinates
chr6:160966472-160968969:-
Coord C1 exon
chr6:160968821-160968969
Coord A exon
chr6:160966566-160968820
Coord C2 exon
chr6:160966472-160966565
Length
2255 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
ACATGCCTGCTTGTTTTCAGTAC
3' ss Score
6.86
Exon sequences
Seq C1 exon
ACTGTATGTTTGGGAATGGGAAAGGATACCGGGGCAAGAAGGCAACCACTGTTACTGGGACGCCATGCCAGGAATGGGCTGCCCAGGAGCCCCATAGACACAGCACGTTCATTCCAGGGACAAATAAATGGGCAGGTCTGGAAAAAAAT
Seq A exon
GTAAGCCACTTTGATTTGGACTCTTTTTCCCTTTGCTGACAAATCTTTTCAAACAGAAGAGGGGCAGAGGAAAATACTGGAAAGACTTCAGGAGGCTAAGCGTAATTAGCCTTAGCATGGAAAGTGCAAGCAGCACAGGCCAGCAAAGCCCCACGCGTGTGGGGGTTCTCAGGCCTCTTCTCTTTTGACATTTCTTTACTGTTTCCATTGTTGGGTGCTGTTTCTCGTTTCTAGTGCTTGTCCTCTAAGCCAGGGGTCCCCACTCCAGTACTGGTACTGGTACTGGTACTGGAACTGGTAATTATCTGTGGCCTGTTAGGAACTGGGCTGCACAGCAGGAGGTGAGCTTCGGGGGAGCAAACAAAGCTTCATCTGTATTTTCTGCTGCTTCCCATCACTCTCATAGCTGCCTGAGCTCTGCCAGCTGTCAGATCAGAGGCAGCATTAGATTATCATAGCACAAACCCTATTGTGAACTGCACATGTGAGGAATCTAGATTGCATGCTCCTTATGAGAATCTAATGCCTGATGATCTGTCATGCTTCCATCACCCCCAGATGGGACCACCTACTTGCAGGAAAATTAGCTCAGGGCTCCCACTGATTTTACCTTATGGTGAGATGCACATTTATTTCATTATATATTACAATGTAATAATAATTGAAATAAAGTGCACGATAAATGGAAGGTACTTGAGTCATCCTTTAACCATCGCCCCCTCACCCCAGGTGCACAGAAAAATTGCCTTTTATGAAACTGGTCTCTGGTGCCAAAAAAGTTGGGGAACCACACTGCTCTGGGTTCTAGTAGTCAGAGATGCCCTCTATGAGGCTTAAGTCAGATTTTTCTAGAAAAGATTTGGATGGGCCATCAGGTCACCATGAGACTTCCCTTAGCCTCATGCATTCTCTGTGATGGTTTACTTTGGGGCCTATGAATAGGGAAGACTGAGATATAGGAAAAACCAAAGTGTCTGTGTTCCCCCACTCTCACACCCATGTAACATAACACTTCTCACACCAGATATGGGGGGATTTCTCCTCACACCCCAAGCGAGTCTCCAGCAGATACCAGCTGGGTGTCCTACAATGTAACTCGGTCCTGACACTCTATCTGGAGACAGTGTCAGATCCCACAAGTTAAGGCTCAGTCCTACAAGACTGCCCCACTGCAGATGCCAATCCCAAGTTGCAGGCTGTGACCTGTACTTCTGCCCAGCTGGATAAAGATCTGTTTTTCTATATGACCCTCCATGGGTTTGATTACTTTGCTAGAGTGGCTCACAGAACTCAGGGAAACACGTTACTTTTATTTACCCATTTATTATAAAAGATATTAAAAAGGATCCTGGTGAACAGCCAGGTGGAAGAGATGCACAGGGCAAGGCACGTGGGAAGGGGCTCAGAGCCTCTATGCCCTCTCCAGTGCACCAGTCCCCAGTACCCTAAGTGTTCAGCAACCCAGAAGCTCTCCAAGTGCAGTCTTGTTGGGTTTTTATGGAGGCTTCATTACAGAGGCACAGTTGATTACATCATTGGCCATCGGTGATCGGCTCACCTTCGGCCCCTCTTCCCTCCCTGGAGGTTGGAGGGTGGGGCTGAACAGTTCCAACCCTCAAGTCACATGGTTGGTTCCCTTGGCAACCAGCCCCTGGGGCTATCCAGGAACCCACCAAGAGTTGCTTCATTGCAGCTCCCTTCACCCAGGAAACTCCAAGGGATTTAGGAGCTCTGTGTTAAGAACTGGGGGGCAGAGACCCAATATACATTTCTTATTCTATCACAATATCACAGGAAGCTAAGGATGATACTGCCTTTGTGTGTCTTGGCTGTGGATGGTGCATAATGCATGGAAGTAAGCATTTCTGAATCAACAGCAAACAGGCTTTATCAGGTAGAAGACCCCTCAGCGCCCCAGGGACAAAGCTCATCAATGATGTCCCACTGTCCTCTGAGGCTCTAGCTCTAAGACCTCCAGTGGGTCAAGCTCCTGGAGAAGTGGCACATTCTCCAAAGACCCTTCAGGGTCACCACACCCTGGTTAAGGGTGTGGCCTCATAACTCCTTTTGACTATGACTGATGGCTTACAGCATAGAAAGAAATAACTTTGTCAAAAAATATAATAATGATAGAAAGGAAGAAGGAACGCTCCCTTTTGTCTTCTAAGAATAGATGTGAAATGTGTGTGCCTTAGAATATCTTCTCCCTCTCCTGCTCCACGTGAGCTGGAGCTTACATGCCTGCTTGTTTTCAG
Seq C2 exon
TACTGCCGTAACCCTGATGGTGACATCAATGGTCCCTGGTGCTACACAATGAATCCAAGAAAACTTTTTGACTACTGTGATATCCCTCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198670-LPA:NM_005577:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(60.0=96.0)
A:
NA
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)