HsaINT0095631 @ hg38
Intron Retention
Gene
ENSG00000198670 | LPA
Description
lipoprotein(a) [Source:HGNC Symbol;Acc:HGNC:6667]
Coordinates
chr6:160537855-160540183:-
Coord C1 exon
chr6:160540043-160540183
Coord A exon
chr6:160537962-160540042
Coord C2 exon
chr6:160537855-160537961
Length
2081 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TGCTAATACTTTCCTTACAGGCC
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTCCTCAAGGCCTTCATCCTACAAGGTCATCCTGGGTGCACACCAAGAAGTGAACCTCGAATCTCATGTTCAGGAAATAGAAGTGTCTAGGCTGTTCTTGGAGCCCACACAAGCAGATATTGCCTTGCTAAAGCTAAGCAG
Seq A exon
GTACTCGCTCACCTGTGGTCTTCACCCCACGCTGGTGAAGATATTTGCTTTATGTCTGGGTTTTATGGGCCATGGCCACTGCATGGCAGTGGGGAGGAACTGTCTATCACATGAAAGGCTCAAGGGCTTTGGGGACAGCATCAATCTTCAACCCCAGCCCTGCCACATGTTAGTTGTGCTCTTTAAAAAGGCAGAAGGATTCGTTTCCTCACGTGGAAAAAGAGATACCCTGTTACCCGTAAAACTTACTTAATGTTCACCAGTTCATCCACATTCATGATCAGGGAAAGGTTGTTATTCCAGGCTAACTATTCTCCTTTCATAATAATATGCTGGAGAGAATCAAATGAGATTGCATTTCAAAGCGCTTGAAAAACCACCATATCGAGCCATGCTTAGTGTGGGCGCCTCTAATCACTGCTATTCAGGAGGCTGACGAGGAAGAATTGCTTGAGCCCAGGACTTCAAGGCTGTAGGCAGCTATGATTGTGCCACTGCACTCCAGGCTGGGTGACAGATCAAGACCCTGTCTCAACAAAAGAAAAGAAAACAAAACAAATGAACAGAAATATTCCACAATGTCAAAAAAAAAAAAAACCCACACAACATACAATTTACAAATGCAAATAATAATATTATTGTTGTCTTCTTTGATTTTCTCTTTCCTGGTGAAATTTTGTTTTATTAAGCCTGACAAAGTGATACCTTTGCTTACATCACTTAAAGTTAGTCTATTTGGACCTAGGTGACAGTACAATCAGCTAAGAAACAGTATTTGTAGGAGAGGCAGGTTTGGGACAGGTGACAAGGCATGTGGGGTGCTCGCTGTGCTGGTGGCTCTGGAAGGCAGGGTGTCAATGCAGACAGGGATGAGCATGGCCTGGTTGGGAAGGCATGGGGCAGGCAGGAGCCTGAGCTGCTCTCCTGGGCCTGGTCACAAGCCCATGGCAGCTTCTCTGGGTCTGTGAACTGAGGGGTGATGTCCTGGAATCCTCTGACACTCTAGGAAGGAGAGAAGGGCCTTTCTGGCTCAGCCTTTATAAACAGTAGCTGATCTCCCTCTTGCTCCCCAGGGTCCTCCCCACCATCCCAGCAAATGTGCAAATACAAGATCTCTGCTCCTCATGGTCCTCAGAGAGCTGGGGTGTTCTGATGGCTTGAACAAGTCACTTAGGAAATGTGGGGTTTTGGAGGCATTCTCTGATAGGCTGATACGTTTTGAGTTTAGAGTTCCCACCGCACATCCCCACACCCCTAGAGTCTAGGGCATTTAGTGCTCCATGAGGGAACCTGTAGAGTGAGGACATCTGCATCACAGGCTGGGCCTTCTAGTGTCCAGAAGCAGAAAGTGTGTCTGCTTCAAAGTTGGTGCTAATGATGATTTTTGGTCAGAATACGGCATTTCTCATTTCCATTCCTTTATCCCCTTGAACTTACTAAAGTAGAATCAGGTCTAAAAACCAGAGTTCTAATCTTTAAGAGTCCCTGGGATTCTAAGGTATATGAATGTCCTTGGAAAACAATACCATTTAGTTCATGCAAGGTGCTTATTTCCCATCCTCTTTCATTTGATGTCTAGCATTTTACTGCATTCTTACCACCACGGTTTAGTAACATTCACGAGGAGGAAGTGGAGGATCCAGATGGAGCAACTTGCTCTGGGCACACAAGGCATTTGCAATTTTATACCCTCTTGATGATGTCTCAGCCAGACATTCTGCCCAGTCATCAATGCCCTCTTCAATTAATATGAAAGGACACACTTGGCATGAGATTCCAATCGTGCACAGAATATACATGAGAAGTGTGCCTTTGTCATCCCTACTTTCAAAGGCTAAGGCCACCCTCAGTTTCTTGCATGCAACTGATGCCTTTCAAATGAAACCTTACATCTGTGTAGTCCATAGGCAACCACAGGCAAATGTGAGGGTGAAACGCTGTGTTCTACATTGTTCTGTGTCAGTGAAGCAAGGCAGTGCCAGCTCAGAGGGCTCTGGGGCTTCAAGGCAGGGATGCCTGGTTGTAGGTACTGCCACTTCCAGCTGGGCAGTGAAACATAACTGCTAATACTTTCCTTACAG
Seq C2 exon
GCCTGCCGTCATCACTGACAAAGTAATGCCAGCTTGTCTGCCATCCCCAGACTACATGGTCACCGCCAGGACTGAATGTTACATCACTGGCTGGGGAGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198670:ENST00000316300:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development