RnoINT0113529 @ rn6
Intron Retention
Gene
ENSRNOG00000017223 | Plg
Description
plasminogen [Source:RGD Symbol;Acc:619893]
Coordinates
chr1:48527785-48530670:-
Coord C1 exon
chr1:48530530-48530670
Coord A exon
chr1:48527892-48530529
Coord C2 exon
chr1:48527785-48527891
Length
2638 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGG
5' ss Score
9.77
3' ss Seq
ATTTGCTGTGCTCCTTTCAGCCC
3' ss Score
9.2
Exon sequences
Seq C1 exon
ATCTTCGAGACCTGAATTCTACAAGGTTATCCTGGGAGCACACGAAGAACGAATCCTTGGGTCAGATGTTCAGCAAATAGCAGTAACCAAACTGGTCTTGGAACCCAACGACGCTGACATTGCCCTGCTGAAGCTAAGCCG
Seq A exon
GTACGGGTGCCCCTGGGTTTGGATCCCAAGCTGAGTAAAGAGAGCAGCTTCATGGCAGGGTCTTATGGGCCACAACTATGGGGCAGAGCTGTCTAGTATGCAAAGCATGGGAGTTTAGGAAACAATGGGGATAAATCTCATCAGAAAACCAGGATTCAGCCCAGTTCTGCATACCCCAGGCACATTCCTTAAAAAGGAAGCCAGATTCAGTTTCCTTATATAGAAAAAGAATTAAAATATAAAGTACAGAGTCACCTCCATGTCTCCCCCACCAGCTAATAATATGAATTCACTGATAATTACTCCAGGCTAACAAAGCTCCTCCATCAGTTACTCCAGGCTAACAAAGCTACTCCATCAGTTACTTCAGGCTGACAAAGCTACTCCATCAGATACTCCATGCTGACAAAGCTACTCCATTAGTTACTCCAGGCTGACAAAGCTCCTCCTAATATAATGAAAGAATCAAATGAGATTATTTGATTACTTCAAAGCACTTTTAAAAGCTACAGACATATGCCTGGCATGGTTGCACATGCCTTGATCCCAGCTCTTGGGAGACAGAAGCAGGTGGAACTCTCTGAGTTTGAGGCTAGCCTGGTTTACACAGTGAGTTCCAGTAAAGCCAGGGCTACAGGGAGAGACATTAGCTCAAAAAACCAAAGCCCCAAACCAAAACAATAAGAGTAAAATCCCACAAATACAGGGGAGAGGCGGGGACTAGAGAGAGATCAGCAGTTAAGAGCTTGCTGCTTTTTCAGAGAACCTGAGTTTGGTTCCCAGAATCTCTATCAAGTGGTTCACAACTACCTGTAATTTCAGCTCTGGACACACACATACATTTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAAAACCAGCCAACCAAACAACAAACCAAGGTAGGAGAGAACAGAAAGAAACAAGAAACAATTCACAAACACAAGTTCCCTCACTGGTCTTTGTCTGCATTTTCCCTGCTGAAGTGTAGTTTTTAAAGCCAGGCACTGGGTAATTAGGTTTGTTCCATAGAGTTAGGAATGTTTGGAAACAGGTCCCTTCCCATGGACACAGCACACAAATGGTCAGCTATTTTGAGAACTAGACATTTGGGACAGGCAAAAGGCACTTGGAGCACATCAGCTGTGCCTGATGGCTTCCAGATGACAGGGAGATGATTCTGGCAGAGACAAAGGCTGGTCCAGCCAGTGCAGGCTGCTGGTCTCAAACACTGGGCCATGTTACTGGGCTGTAAATGGAGAGGTGATGTCTTGGGACATTCTGATGTGCTGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGGGGAGTTACTCAGTAAATCAGTTCATCTCCCTCATGTTCCCAGAACCTTCCCTTGCGTCCCAGCAAATGAGCAAACACAAGACTTCCCGTCCATGTGTGTTCCCTTAGATTCATTAGAGTGATCTAATGGCTTGAACAAGTCATTCAGCAAATAGGCTGTTCTCTGACAGCCTAACATATCTTGGCTTTTACCATATTATTTCCATACCCCAAAGATCGAGGACCAAAGGTCTTGGTGTCCCATAAAGGAACCTGTGCATGACACCCCTGTGAGAAGCTGGGTCTGTTTTGGTCATTCTGGGAAAAGGTGTCTGCTGCAAAGCTGGAAAGAGTGGATTCTCAATGAAAACAGGGCATTTCTCATTTCCAGTCTTTTTTTTCTGTTCTTTTTTTAAAATCTCCTGAATGCACTAAGACTTTGGGTTTGAAAAATCAAAGTTAGAATGCATGTGAATCCATGGAACTCTTTGCAGGTGCAAGTTCTTTGAAAACAGGGCTGGTTCACTCGTGTGAAGAATTCACTTCCAAATCACACTCTCTCTTGGTGTACACCTTTGCCTGAATTCTTGTAACCATTTTAGCATTTTTCAGATGAGAAGATCTGGGACCCAGAATGGTGGAATAAATAGTCCTGGCCAAATATCTTTTGATCGTAGTGTCGCTGGATAGCTTCAGGATGGTCCACCCACAGAATGGCACCCTCTTACACTTAATAGTAAATCCTAAAGCACAGGACAGGGCTCAGTTGGTAAAGCGCTTGCCACACAGGCATGGGGACCCAAGTTCAAATACCCAGCATTATGTCAAAAGCTGGGCATGAGGGTAACCCCAACACTGTGGCCAGGGCTGGGGAGCGAGAGACAGGAGGACTCCTAGAGATTACTGACAGTCTCACTGACTCAATGAAGTCCAGGTTCTGGGACAGACTCTGTCTCCAAAACTGAGGAGATGAACAACTGAGGAAGACACCTGATATTGACCCGTGGCCTCTTTGTGCATATGCACACGTGTGCATTTGGTTCCTGCATGGGCACACACACGAAGACATACATCCCCTCCCATAGGGGATTCTTTAGCTCCTAGGACACTGTAGGGCACTGTGAGAATGAAGGGTTTTCTATACTGTTCTGCATCAATAAAATAAAGAGATATTGGCCCAGGGAATTGTTGGGATGCTGAGGTGGGTACCTTGGCTGTGGGTGATCTTCAGTGAAGGGTGGGGGTCTCCCACAGAGTAGTTGATGTAACATTTGCTGTGCTCCTTTCAG
Seq C2 exon
CCCAGCCACCATCACAGATAATGTCATCCCAGCTTGTCTGCCATCTCCAAATTATGTGGTTGCCGACCGGACACTGTGTTACATCACCGGCTGGGGAGAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017223:ENSRNOT00000023368:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]