HsaINT0127558 @ hg19
Intron Retention
Gene
ENSG00000122194 | PLG
Description
plasminogen [Source:HGNC Symbol;Acc:9071]
Coordinates
chr6:161160100-161162449:+
Coord C1 exon
chr6:161160100-161160240
Coord A exon
chr6:161160241-161162342
Coord C2 exon
chr6:161162343-161162449
Length
2102 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TGCTGATGCTTTTCTTTCAGTCC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTCCCCAAGGCCTTCATCCTACAAGGTCATCCTGGGTGCACACCAAGAAGTGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGGCTGTTCTTGGAGCCCACACGAAAAGATATTGCCTTGCTAAAGCTAAGCAG
Seq A exon
GTACTCGTTCACCTGTGGTCTTCACCCCACGCTGGTGAAGATATTTGCTTTATGTCTGGGTTTTATGGGCCATGGCCACTGCATGGCAGTGGGGAGGAACTGTCTATCACATGAAAGGCTCAAGGGCTTTGGGGACAGCATCAATCTTCAACCCTAGCCCTGCCACATGCTAGCTGTGCTCTTGAGAAAGGCAGCAGGACTCCGTTTTCTCATGTGGAAAAAGAGTTGAAATGAGGTACTCTGTTACTCCTAGAACTCACTTAATGTTCACCAGTTCATACACATTCATGATCAGAGAACGATTCAGTTATTCCAGGCTGACAATTCCCCCTTCATCATAATATGTTTAAGAGAATCATATAAGACTATATTTGTTTCAAAGCACTTTAAAAACCACAAGATCGAGTTGGGTGTCTGGTGTGGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGGGTCACTTGAGTCCCGGAGTTTGAGGCTGCAGTGAGTTATGATCGTGTCACTGCATTCCAGCCTGGGCGACAGAGTAAGACACTGTACCAAAAAAAAAAACACCAAAAAAACAAAAAACAAACAAAAAAAAAACAACTTCACAATGTCAAAAAAATCACAAATACAGTTTATAAATGTAAATTATATTATTATTATTGTCTTCTTTGATTTGATTTTCTCTTTCCTGTTGAAATGTTGTTTCACTAAGCCTGACAAAGTGAAACATTTGCTTATGTCACTCATTTAGTGCTGTTTGGAGCCAGATACTAGTTGAGTCAGCTAAGAAACAGCTATTTGTAGGAGAAGCAGGTTTGGGACAGGTGACAAGGCACGCAGGGCGCTCGCTGTGCTGGTGGTTCTGGAAGACAGGGTGTCAGTGTGGACAGGGATGAGCATGGCCTGGATGAGAAGGCACGGGGCAGGAGCCTGAGCTGCTCTCCTGGGCCTGGCCACAAGCCCAGGGCAGCTTCTCTGGGTCTGTGAACTGAGGGGTGATGTCCTGGGATGCTCTGACACTCTAGAAGGAGAGAAGAGCCTTTCCAGCTCAGCCTTTATAAACAGTAGCTGATCTCCCTCCTGCTCCCCAGTGTCCTCCCCGCCATCCCAGCAAATGTGCAAATAGAAGGTCCCCGTTCCTCATGATCCTCAGAGAGCTGGGGTGTTCTGATGGCTTGAACAAGTAATTTGGAAATTTTGGGTTTTGGAGGAGTTCTCTGATAGGCTGATACATTTCGAGTTTAGAGTTCCCACCCCACATCCCCACACCCCGAGTCTAGGGCATTTAGTGCTCCACCAGGGAACCTGTAGAGTGAGGACGTCTGCATGACAGGCTGGGCCTTCTGATGATGCTCAGAAGCAGAAAGTGTGCCTGCTTCAAAGTTGGTGACGATGATGTTTCTTGATCAGAATAGGGCATTTCTTATTTCCAATCCTTTATCCTCTTGAACTTACTAAAGTAGAATCAGGTCTAAAAACCGGAGTTCTAATGTTTGAGAGTCCCTGGGACTCTAAAGTATATGAATGTTCTTTGAAAACAAATACCATTTTGTTCAAGCAAAAGGCTTATTTCCAATCCTCTTTCATTTGGTATCAAGTATTTTACTGGATTCTTACAACTATGGCGTAGTAACATTCACTGAGGAGGAAATGGAGGATCCAAGGATGGAGCAAGTTGCTCTGGGCACACAACACATTTGCAATTTTACAGCCTCTTGGTGGCATCTCAGTCAGACATTCCATGCACTGATCAATGCCCTATTCGATTAATGTAAAAGGACACACTCAGCATGAGATTCCAGTTGTGCACAGAATATACATGAGAAGTGCGCCTTTGTCATCCCTACTTTCAAAGGTGAAGGCCACCAGCAGTATCTTGCATGCAACTGATGCCTTTCAAATGAAACCTTACATCTGCATAGTCCATAGACAACCACAGGCAAATGTGAGGGTGAAACTCTGTGTTCTACGTTGCTCTGTGTCAGTGAAGCAAGGCAGTGCCAGTTCAGAGGGCTCTGGGGCCTCAAGACAGGGATGACTGGTTGTGGGTACTGCAGCTGCGAGCAGAGCAGTCAAACATAACTGCTGATGCTTTTCTTTCAG
Seq C2 exon
TCCTGCCGTCATCACTGACAAAGTAATCCCAGCTTGTCTGCCATCCCCAAATTATGTGGTCGCTGACCGGACCGAATGTTTCATCACTGGCTGGGGAGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122194-PLG:NM_000301:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)