GgaINT0078395 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWX6]
Coordinates
chr3:44698453-44699820:+
Coord C1 exon
chr3:44698453-44698593
Coord A exon
chr3:44698594-44699713
Coord C2 exon
chr3:44699714-44699820
Length
1120 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCC
5' ss Score
7.59
3' ss Seq
CTTTTGTTTGTTTCTTTCAGCCC
3' ss Score
10.15
Exon sequences
Seq C1 exon
GTCATTACGGCCATCTTCGTATAAAGTATACCTCGGATTACACGAAGAAAGAGCATTGGAATCATCAGTGCAGAAAAGAGATGTTGAGAAACTGTTCAAGGAGCCTCACGGGCAGGACATTGCTCTACTAAAACTGAGGAG
Seq A exon
GTATCCTTTCACCTGAAGCATTTCTTCATTCTGACAGGAAAATTTTGATTTGCCTGCTTTTTAACTAAGCAGTGGTTGTTTGCTGGGGCTATAGAAGTGTGTGTTTCTATGCATATTGTGACCCTCTCTTCCCTTTCTGCAGAAGCTCCAGTGGAAGCTAAGGTGATTCTGTTGCAGGGATGCAGAAAGGGAAAGGGCTGCTTTGGAGAGGGAAGAGGGCTAGAGATGGTGACCTATGCTAGCAGTGCACTCAGAGCCAGCTGCTGTGAAGTATGGTGGAGGCAGCAGGGCAGCAAGAGGTTGCGATTAAAAAGGTTTTTGCTTTCACTCTATAACTTTCCCTACACACTTCGATCTCAGTAATGTTACGAAGATTGAAGGCTACAGTGGCAGCACAGTGTGACCCTGTACTTTTTCCATGACAGAGTGGGGAGAGTTCTTCCAGCGGGTTGTCCTTAGTGCAGGCAAGCAGTACATGCTTTTGATGCAATATCTGGGTTAGCACTTCTTCCATCTGTTTCCATTGGTCTGAAACTCCAGAATGCTATGTAATTGATAGGAATACATCTATATAGCTACAAGCAGATATGAACAAGCACTTGTGCTTTGCTTTCTCTGGCTGCAGTGAAAATCCAAAACACAGCACAATTAAAGTGGCTTCTTAATTGAACCTATCTAAGAATCAGCATGCAGAAGTAAGTCAGAATAACTCAGGCTCTGCTTTATGCTAAGAGTATCCAGTTTAAAAGTGACCTATAAATAGTGAGACTGGGTGTAGGCAGAGTAAGGTAGGCTTTGGTGTCTATGCTTTAACCATACGTGAACACTTTCTTTTGGATTTACTTTAGTATTTCAATATTTTTTCCTTTTGAACCATTCTCCATTTCAGATGTTTTCCTTTTGTGTATCGTGTTCTGTGAGATTAGAGCCTAAAATATAAGTGGTTTTGAATTTCAGAAGAAAAAAAAAGCAAAAAAAGAAGAAAAAGCCTTAAAAGCTCAGAATTTCAAGGAAAAAAAGGCTGACTGTATAAAATCCTCTTAGAAATATTAAGGTGGTATCACAGATAAATGGTCTAATGACTGACCTTGTGTGTGTGTCTTTTGTTTGTTTCTTTCAG
Seq C2 exon
CCCAGCAGTCATCACTGATCAGGTAATCCCTGTTTGCTTGCCAAAAGAAAATGCTGTGTTAGGAGGAAGAGAGGAGTGCTATGTAACAGGTTGGGGAGATACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293:ENSGALT00000006829:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTACGGCCATCTTCGTA
R:
CTTTTGTATCTCCCCAACCTGT
Band lengths:
248-1368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]