MmuINT0122224 @ mm10
Intron Retention
Gene
ENSMUSG00000059481 | Plg
Description
plasminogen [Source:MGI Symbol;Acc:MGI:97620]
Coordinates
chr17:12411461-12414284:+
Coord C1 exon
chr17:12411461-12411601
Coord A exon
chr17:12411602-12414177
Coord C2 exon
chr17:12414178-12414284
Length
2576 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGG
5' ss Score
8.44
3' ss Seq
ATTTGATATACTCCTTTCAGCCC
3' ss Score
6.2
Exon sequences
Seq C1 exon
ATCTTCAAGACCTGAATTCTACAAGGTTATCCTGGGTGCGCACGAAGAATATATCCGTGGGTTGGATGTTCAGGAAATATCAGTAGCCAAACTGATCTTGGAGCCCAACAACCGTGACATTGCCCTGCTGAAACTAAGCCG
Seq A exon
GTATGGGTGCCCCTGGGTTTGAATCCCAAGCTGAGTAAAGACAGTGGCTTCATGGCAGGGTTTTTCGACCCACCACCATGGGGCAGAGCTGTCTAGTATGCAAAAGTATGGGAAATTAGGAAAAAATGGGGGTAAACTTAATCAAAAAACCAGGATTCAGTCCAGTTCTGCATACCCCAGGCATATTCCTTTAAAAGGAGTCCAGATTCAGTTTCCCCATATAGAGAAAGAATTAAAATATAAGGTGCAGAAACACCTCCGTGTCTCCATTACCTAATGCCCACCAGCTAATAATTTGCATCCACTTCATGCTGACAAAGCTCCTCCCTCAGTGACTCCAGGCTGACAAAGCTAATCTAAGTTACTCCAGGCTGACAAAGCTAATCCATCAGTTACTCCAGGCTGACAAAGCTTCTCTTAATATAATGAAAGAATCAAATGAGATTGTTTGATTACATCAAAGCACTTTTAAAACCTATAAACATGTGCTCAGCATGGTGGCACATGCCTTTGATCCCAGCACTTGGGGGATAGAAGCAGGTGGATCTCTGTGAGGTTGAGGCTAGCCTGGACTACATAGTAAGTTCCAGGAAAGCCAGGGCTATATAGAGAGACCTTAGCTCAAAAAACGAAAGCCCCAAACCAAAACAACAACAAGAGTCAGATCCCACAAGTATAGGGCTAGAGACCAGCAGTTAAGAGAGCCTGCTGCTTTTCCAGATGACTAGAGCTTGGCTCCCAGAATCTGTATTAAATGGTTCACCGCTACCTGGACTTTCAGCTCAAAGTGATCTAACACCCTCTTCCGGCCTCTGTTGGCACACACACAAAAAAGCAAAAACCAAGCAGACAAACCCAGGTAAGGAAGAGAACAGAACGAGACAAGAAACAATTCACAAACACAAACGCAAGTCTCATTTCCATTGTTCTTCTTTCTGTCCTTATTTTCCCTGCTGAGATGTATTTTTTAAAGCTAGACATTGGGTAATTAGGCTTGTTCCATGGAATTAGGAATGTTTGGAAGCAGGTCCACCCCCGTGGACACAGCTCACAAACGGTCAGCTATTTTGAGAAATAACACTTTTGGGACAGGCAACAGGCACGCAGTGCACATTAGCTGTGCCTGATGGCTTCCAGATGACAGGGAGATGATTCTGGCAGAAACAAGGACTGGTCCAGTCAGCGCAGGCTGCTGGAGGGAGTTCTCTGGTCTCAAACACTGGGCCATGGTTCTGGGCTGTAAACAGAGAGGCGATGTCTTGGGACATTTTGATGTATTAGAAAGCTAGAAGGAGGGACAGGAAGTTACTCTATAAATCAGCTGATGTCCCTCATGTCCCCAGAGCCTTCCCTTGCATCCCAGTAAATGAATGAATACAAGACCTGCCTGAGTGGTTCCCTTGGATTCACTAGGGTGATCCAGGGCTTGAACAGGTCATTCAGCAAATAGGAGGACCTTGCTCTCTGACAGCCTGACGTTTTCTGGCTTTGATTGTATCATAGCCGCACCCCACAGACCGAAGAGCAAAGGTCTTGGTGTCCTGTAAAGGACCCTATGCATGACATTCCTGTGAGAAGCTGGGTCTGTTTTGGTCATTCTGGGAAATCATGTCTGCTGCAAAGCTGGAGACAGTGTGGGTCCTGGATGAAAACAGGGCGTTCCTCATTTCCAGTCTTTTTTTTTTTTTTTTAATCTCTTGAATGCACTAAGGCTTTGGGTCTGAAAAAAAAAAATCAAAGTTAGAATACGTGTGAATCCATGGAACTTTATAACTCTATTTAGGTGCAGGTTCTTTGAAAACAGAGCTGTTTCACTTCTGTGAAGAGCTCACTTCCAAATCACTTTCTCTTGGTGAACACCACTTGTCCAGATTCTTGTAAGCAGTTCAGCATTTAACAGGCGAGAAGATCTGGGACGCAGAAAGGTAGAATAAATAGCCTCGGCCAAACACCTTTTGATCTTAGTGTAGCTGGATAGCATCTGGATGGTCCATCCACAGAAAGGCACCCTCTTACATTGAATAGCAAGTCACAAACCACAGGACAGGGCTCAGTTGGTAAAGCACTTGCCGCACGAGCGTGGAGACCCAAGCTCAAATCCCCAGTGTTATGTCAAACGCTTGGCATGAAGATATGCACCTGTAACCCCAACACTGGGGCCCAGGGGGAGACACAGGAGGACTCCTAGAGCTAGTCTCGCTGACTCAGTGAACTCCAGGTTCTGTGACAGACCCTGTCTCCAAAACTGAGGGGATGAACAATTGAGGAAGACACCTGAAACTGATCTCTGGACTTTCTATGCATATGCACAAGTGTGCATTTGGTTCCTGCATGGACACATGCGAACAAACATACATCCCCTCCCATACAATGGATTCTTTAGCTTGTAGGACATTGTAGAGTACTGTGAGAATGAAGGGTTTTCTATACTGTTCTATGTCAGTGAAGTAAAGAGATACCAGCCTGAGGAATGCTGGGACACAGAGGAGGGTACACTCGGCTGTGGGTGATCTGCAGGTGAAGGGTGGGGGTCTCCTGCAGAGCAGTTGACGCAACATTTGATATACTCCTTTCAG
Seq C2 exon
CCCAGCCACCATCACGGATAAAGTCATTCCAGCTTGTCTGCCATCTCCAAATTACATGGTTGCTGACCGGACAATATGTTACATCACCGGCTGGGGAGAGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059481:ENSMUST00000014578:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types