HsaINT1027381 @ hg38
Intron Retention
Gene
ENSG00000122194 | PLG
Description
plasminogen [Source:HGNC Symbol;Acc:HGNC:9071]
Coordinates
chr6:160739068-160741417:+
Coord C1 exon
chr6:160739068-160739208
Coord A exon
chr6:160739209-160741310
Coord C2 exon
chr6:160741311-160741417
Length
2102 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TGCTGATGCTTTTCTTTCAGTCC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTCCCCAAGGCCTTCATCCTACAAGGTCATCCTGGGTGCACACCAAGAAGTGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGGCTGTTCTTGGAGCCCACACGAAAAGATATTGCCTTGCTAAAGCTAAGCAG
Seq A exon
GTACTCGTTCACCTGTGGTCTTCACCCCACGCTGGTGAAGATATTTGCTTTATGTCTGGGTTTTATGGGCCATGGCCACTGCATGGCAGTGGGGAGGAACTGTCTATCACATGAAAGGCTCAAGGGCTTTGGGGACAGCATCAATCTTCAACCCTAGCCCTGCCACATGCTAGCTGTGCTCTTGAGAAAGGCAGCAGGACTCCGTTTTCTCATGTGGAAAAAGAGTTGAAATGAGGTACTCTGTTACTCCTAGAACTCACTTAATGTTCACCAGTTCATACACATTCATGATCAGAGAACGATTCAGTTATTCCAGGCTGACAATTCCCCCTTCATCATAATATGTTTAAGAGAATCATATAAGACTATATTTGTTTCAAAGCACTTTAAAAACCACAAGATCGAGTTGGGTGTCTGGTGTGGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGGGTCACTTGAGTCCCGGAGTTTGAGGCTGCAGTGAGTTATGATCGTGTCACTGCATTCCAGCCTGGGCGACAGAGTAAGACACTGTACCAAAAAAAAAAACACCAAAAAAACAAAAAACAAACAAAAAAAAAACAACTTCACAATGTCAAAAAAATCACAAATACAGTTTATAAATGTAAATTATATTATTATTATTGTCTTCTTTGATTTGATTTTCTCTTTCCTGTTGAAATGTTGTTTCACTAAGCCTGACAAAGTGAAACATTTGCTTATGTCACTCATTTAGTGCTGTTTGGAGCCAGATACTAGTTGAGTCAGCTAAGAAACAGCTATTTGTAGGAGAAGCAGGTTTGGGACAGGTGACAAGGCACGCAGGGCGCTCGCTGTGCTGGTGGTTCTGGAAGACAGGGTGTCAGTGTGGACAGGGATGAGCATGGCCTGGATGAGAAGGCACGGGGCAGGAGCCTGAGCTGCTCTCCTGGGCCTGGCCACAAGCCCAGGGCAGCTTCTCTGGGTCTGTGAACTGAGGGGTGATGTCCTGGGATGCTCTGACACTCTAGAAGGAGAGAAGAGCCTTTCCAGCTCAGCCTTTATAAACAGTAGCTGATCTCCCTCCTGCTCCCCAGTGTCCTCCCCGCCATCCCAGCAAATGTGCAAATAGAAGGTCCCCGTTCCTCATGATCCTCAGAGAGCTGGGGTGTTCTGATGGCTTGAACAAGTAATTTGGAAATTTTGGGTTTTGGAGGAGTTCTCTGATAGGCTGATACATTTCGAGTTTAGAGTTCCCACCCCACATCCCCACACCCCGAGTCTAGGGCATTTAGTGCTCCACCAGGGAACCTGTAGAGTGAGGACGTCTGCATGACAGGCTGGGCCTTCTGATGATGCTCAGAAGCAGAAAGTGTGCCTGCTTCAAAGTTGGTGACGATGATGTTTCTTGATCAGAATAGGGCATTTCTTATTTCCAATCCTTTATCCTCTTGAACTTACTAAAGTAGAATCAGGTCTAAAAACCGGAGTTCTAATGTTTGAGAGTCCCTGGGACTCTAAAGTATATGAATGTTCTTTGAAAACAAATACCATTTTGTTCAAGCAAAAGGCTTATTTCCAATCCTCTTTCATTTGGTATCAAGTATTTTACTGGATTCTTACAACTATGGCGTAGTAACATTCACTGAGGAGGAAATGGAGGATCCAAGGATGGAGCAAGTTGCTCTGGGCACACAACACATTTGCAATTTTACAGCCTCTTGGTGGCATCTCAGTCAGACATTCCATGCACTGATCAATGCCCTATTCGATTAATGTAAAAGGACACACTCAGCATGAGATTCCAGTTGTGCACAGAATATACATGAGAAGTGCGCCTTTGTCATCCCTACTTTCAAAGGTGAAGGCCACCAGCAGTATCTTGCATGCAACTGATGCCTTTCAAATGAAACCTTACATCTGCATAGTCCATAGACAACCACAGGCAAATGTGAGGGTGAAACTCTGTGTTCTACGTTGCTCTGTGTCAGTGAAGCAAGGCAGTGCCAGTTCAGAGGGCTCTGGGGCCTCAAGACAGGGATGACTGGTTGTGGGTACTGCAGCTGCGAGCAGAGCAGTCAAACATAACTGCTGATGCTTTTCTTTCAG
Seq C2 exon
TCCTGCCGTCATCACTGACAAAGTAATCCCAGCTTGTCTGCCATCCCCAAATTATGTGGTCGCTGACCGGACCGAATGTTTCATCACTGGCTGGGGAGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122194:ENST00000308192:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains