HsaINT0096513 @ hg38
Intron Retention
Gene
ENSG00000162337 | LRP5
Description
LDL receptor related protein 5 [Source:HGNC Symbol;Acc:HGNC:6697]
Coordinates
chr11:68413689-68416527:+
Coord C1 exon
chr11:68413689-68414012
Coord A exon
chr11:68414013-68416327
Coord C2 exon
chr11:68416328-68416527
Length
2315 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CCTGTCTTTGCCTCCTCTAGCGC
3' ss Score
9.67
Exon sequences
Seq C1 exon
GTCAGGAGCGGGTCGTGATTGCCGACGATCTCCCGCACCCGTTCGGTCTGACGCAGTACAGCGATTATATCTACTGGACAGACTGGAATCTGCACAGCATTGAGCGGGCCGACAAGACTAGCGGCCGGAACCGCACCCTCATCCAGGGCCACCTGGACTTCGTGATGGACATCCTGGTGTTCCACTCCTCCCGCCAGGATGGCCTCAATGACTGTATGCACAACAACGGGCAGTGTGGGCAGCTGTGCCTTGCCATCCCCGGCGGCCACCGCTGCGGCTGCGCCTCACACTACACCCTGGACCCCAGCAGCCGCAACTGCAGCC
Seq A exon
GTAAGTGCCTCATGGTCCCCCGCACCTCACTCCCTCGTTAGATCAGGCTGGTTCTGGGAGCTGACGCTGAAAGGAGCTTCTCATCTGGGGTTCCTGGGTGTACATAGATGGTTGGGTAGGTTGTGCACTGCACAAGCTGCATGATGCTACCTGGGGGTCCAGGTCCAGGCTGGATGGACTTGTTGCTTCATCAGGACATAGATAAATGGCCAAAACTCCTCAGCTGGAAGGTCCTGGGCAGGATCTTTGGGTGTGAAAACCAGTCACAGGGGAAGGGTGCTTGCTCATACTGCCAGCACAGTGCTGAGTGCTTTCCATAGCGCTCGTTTACTCCTCAAGCCTGGAGGGTGGGGAGTAGCATGGTCCCATTTCACGTACAAGGAACCCGATGCACAGAGAGGTGTGGCAACCCATCCAAGGCCATACAACTGGGGTGGGTTGAGCCGGGGTTGACTGTGGCAGGCTGGCTCAAGAGTCCCTGCTCCTGAACCCTTGCCAGGCAGCCTGGCATCAGCTCGGGGAATTTTTGCCCTGACCCTTGGAAGCAGGTGGGCCTCTTTGTTCTCATGTCAGTGATGAGAAGAGTGACTTTCCTATGGCCCCTCTGGAGTACAGGTGTTTCCTGTTGGCGGGCTCTTCCCCCATGACATCAGCAGCGAGCTGGTTATGATTCCCTACGCAGAACTTGATAGTTTATAAAGCTCTTTGTCATCCAGGCCCCGTTGGAGTCTCACGCAGACCTGGTCGCAGGCGGGGCTGGTCTTGCCTGTCCCAGCTGCATGGATGGGGAACTTGAGGCTTGCAAAGGTTAAGGGGCTGTTCGAGGCCCAGGCTGGCAGGAGATGGGCCTGGGCCAGAGTCTGGGACTTCCCATGCCTGGGCTGTCTTTGGTCCTGTTGCTCACCATCCCTCCCTGGGGCCATGACCTTAGAGAGCCAAATGGAGGTGCAGGTAACCCACGGCAAGGAGGGGTTGCCATGACTCAGAGTCCCCGTCCTGTGGCCGGCAGTACCTGGTGCAACGACTTGGATTTCAGACCAGCCACTGTAGCCCGCTGACGGTGCGCTCGAAGTGCCACAGCTTCTGAAGCCAGGCAGGACTCAGGCCAGGAGACTCTGTTAGCTGTTGAGAGGGAGAGGCCAACGGATGTTCTGGTTCTGCTAGAGAGCTGGTTCTTCGGATCCTGGTACCAGTGCACTGAGAGGAGGCCCAGCTTGATTCTGGGGCTGCCTTGTGGTGGCATGTGCTGCTCACTGACACCCTCGAGGAGTGTCTTCTCTCGGGCTTGTTGACTGTGCCCGGTTTTCCGCAGTTCACTGGTGCACACATAGGCACATAGCAAACCGCACACACAGTCGTGGGTATGAGTTTCACTACATTCCACCACCAGTGTTCACTACCATTACCTGCCTTCCGTCTTAAGTGTTCATCATTTAAAAATAAATTTATTGGGCTGGACACGGTGGCTCATGACTGTTATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACTCCATCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGGGCATGCCTATAATCCCAGCTACTTGGGAGGCTGAGAGAGGAGAATCGCTTGAACTTGGGAGGTGGAAGTTTCAAGTGAGCTCATTTTGTGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCGAATGAATGAATGAATGAATGAATGAATGGCAGGGCGTAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATGACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCGTCTCTACTAAAAATACAAAAAATGAGCCAGGCGTGGTGACGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGAGAGGCAGAGCTTACAGTGAGCCCAGATAGCACCACTGCAGTCCAGCGTGGGCAACAGTGCGAGACTCCATCTCAAAAAAAAAATAAATAAATAAAAGAAAAATAAATTTATGATCTATTTCAAAAATAACACATGTACTTTGAAACAGCAGAGACACATATGACACGGAGAATGAAATTCCCCATAGCGCACCCCCAAGAGACAGCCCTGGTCCCCCCGTCTTTCCCGTGGACCTCCAGCGGGGCAGATGCTGAGCCGCCTGTTGTCGAGTGGCGTGCTATCCCGTCCTCCAGCTCCTCTGTGGCTTACAGACACCCACCTGCAGCCCTGTCTTTGCCTCCTCTAG
Seq C2 exon
CGCCCACCACCTTCTTGCTGTTCAGCCAGAAATCTGCCATCAGTCGGATGATCCCGGACGACCAGCACAGCCCGGATCTCATCCTGCCCCTGCATGGACTGAGGAACGTCAAAGCCATCGACTATGACCCACTGGACAAGTTCATCTACTGGGTGGATGGGCGCCAGAACATCAAGCGAGCCAAGGACGACGGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162337:ENST00000294304:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(45.9=15.6),PF0005812=Ldl_recept_b=WD(100=37.6),PF146701=FXa_inhibition=WD(100=33.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development