RnoINT0086686 @ rn6
Intron Retention
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218844221-218846934:-
Coord C1 exon
chr1:218846611-218846934
Coord A exon
chr1:218844421-218846610
Coord C2 exon
chr1:218844221-218844420
Length
2190 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
GTCTGTTTGTCCCACTCCAGCGC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GTCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCCTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACCGACTGGAACCTGCATAGCATTGAACGGGCCGACAAGACCAGCGGGCGGAACCGTACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTTCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCTGGAGGCCACCGCTGCGGCTGTGCTTCCCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC
Seq A exon
GTAAGTGCCTTGATTCCCCTCTGCATGCACCAGGCCTCAGCCCCTCAGCCCCCACTGTGGGCTGTGGTGGAAGAGAGCTTCTTGAGTTGGGTTGAGAGAGCTTCTTGTACATTGGATGGTTGGGCGGTCATGCACTGCACAGGCTTCATGGTATTGCCTGGTGACCAGACGAGGTGAGGGCAGAGCCCCTTAGCTAGTTGGTTCTGTGGGAGGTTCTTTAGACGTAGAAATTACTTAGGAGCTGTGGGACGGGGACATCTCAGTGTACTGCCAGCACTGTCCTAAGCGTTTCCCATGGTGACAACCGTTTCTCAGTCATAGAACCTGAGGTGTGTCGTAACCTGCTCAAGGCTACACAGCTAAGATGCGTCAAACCACCAGAATGGCTCCTCAGTCTGTGTTCCTAATGCTGTAAGCCTGTACACGCTGACTGACCCAGTCGGTGTGGCTGTCTTCTTACATCCATGATAGAGTGAAATTCAGAAGGCCAGGGGGTGATTTCCCAATAGCCCTCTGTGTGTACAGCTGTGTCCCATTAGCAGGCTCCAAGCCAGATACAGATTGGCCTCCAACTAGAACTGGACAGTTCTTGAGGCCTCTGTCCTCTGGGTCTTGTGTGTCACCCACGGGGTGGTGCTTCTTCCCTTCCCTGTGGAACCTTTGAGGATCCTGAGATTTGAAAGGGTGGGAAATGTATCTGACCCTGAGCTGGTCTACAGTGGGCCAGGGCCAGAGTCACCTCCTTGGGGTTGTTTTAAAACATACATTTATTTATTTAGGTTTATGTTATTTTGTTAACTTATATATGGGATGTTTTGCCTATCTGTATGTCTGTGCACTATATATGTGTGGTGCCCAGAGAAGCAAGAAGGCTTGGATGTTCTGGAACTGAAGTTATAAACAGTTATGAGATATCACCTACGTGCTGGGAATATAACCTCAGGTCCTGTGGAAGAGCAGCCAGTGCTCTTAACTGTTGGGCCATCTCTCCAGTTTGGTTTTTTTTGTTTTATTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTGAGATAGAATCTTACTATGTAGCTGGCCTGCAACTTGCTATATAGACAAAACTGCCCTGGAACTCATGGAGATCCACCTGCCTCTGCTTTTCTGAGTGCTGTGTGTCCACCATGCCTACACACTGGGGCTATTTTTGTAGGGAGGTAGGGAGTAGAAGTAAGAATGCTCACTGCCTAGGGTCTGGAACGCTGTGACACCCTGATCCTGGGGGCTGCCTGGCACACATCTGAGTATCACAGTTCCTGAATGTGGGCAGTTGGCCTTGGGCCTCAGGACCTGGGCTTCCTGCCAGGAAGGAGAGCCTGCTTTCTGATCTCGCCAAAAGCAGTTTTCCCCGTTCTGCTCTCCTTGGGCATCTGTGTTCACATTCACACTCCCATACTCCCCACCCCTTGCACACGATTTAAAAAATAATAAAAGCAAATCTCAGAATAAGGCCCGGGACTGGGGATGTAGCTCGTTTGGTAGAGTGCTGACCTAGTGTGAGCAAAGCAGTCCTAGCGTGGCATGAACTGGGTGTGGTGGTGCATGCCTGTGGGCCCTGTACTTGAGAGATAGAGGCTCTCCGTACTTAAGGTGAAGAGTGGAGAGTTCAAGACCATCCTTGATGGCTTGGACAAGTTCAAGGCCACTCTAGGCTACAAGATACCCTAGCTAAAAGAAAGGAAGGAAGGAAGGAAGGGGGGAAAGGGGGAAGGGGAGAAAGAAAAAAGGTATTTATTCAGAACAGCCATACAGACTCTGGGATGATATCGGAAACAGCCTATCACCGTGCCAGCTGACAGTTCTGTCTGCCCTTCTCTAAGGGGTCCAGTGAGAACAGGGCTGGCTGCTGTATCCCTGGCCTCGGCCTCTCATCTCCCACTCACTGATGCTCTCTGTTCAGTCTGTCTGCCCAGCACCCTCAGCTGGCTGGTGTTTTCTGCTAGGTCTGTTTGTTCAGCTTTTCAGCTTACTGATGCTTGGTGCTTGGTCTGTCTGTCCAGAGGTCTTAGCTTGCTCTACTTGCCACTTAGTCTGTCTGTCCAGTCCCTTAGCTTTCACTTACTAATGCTCTCTGCTCAGTCTGTCTGTCCGTCCCGCTCCAGCGCCCTCAGCTTGCTGATGCCCGGCGCTCGGTCTGTTTGTCCCACTCCAG
Seq C2 exon
CGCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGTCCGGACCTTATCCTACCCCTACACGGGCTGAGGAATGTCAAAGCCATCAACTACGACCCGCTGGACAAGTTCATCTACTGGGTGGATGGGCGTCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911:ENSRNOT00000022213:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(45.9=15.6),PF0005812=Ldl_recept_b=WD(100=37.6),PF146701=FXa_inhibition=WD(100=33.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]