HsaINT0096637 @ hg38
Intron Retention
Gene
ENSG00000160959 | LRRC14
Description
leucine rich repeat containing 14 [Source:HGNC Symbol;Acc:HGNC:20419]
Coordinates
chr8:144519615-144520822:+
Coord C1 exon
chr8:144519615-144520054
Coord A exon
chr8:144520055-144520237
Coord C2 exon
chr8:144520238-144520822
Length
183 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CACACCATTCCTACTCCCAGGAA
3' ss Score
6.45
Exon sequences
Seq C1 exon
GCACTATGCTGGGCCTTCCTACCACTTGTGTGTGGCTTGGTAGTGGCCTAGGGTCTCTCCTCCCTGCTGAAGTCCCTCTCCTGCAGGTGGCCGTCTGCCCGGCCCAGCACCATGCACACGCTTGTGTTCTTGAGCACACGGCAGGTGCTGCAGTGCCAGCCAGCTGCCTGCCAGGCCCTGCCCTTGCTGCCACGCGAACTCTTCCCCCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGTGGTACTGCGCGAGTTGGTACACACGTGGCCCTTCCCGCTGCTCAGTTTCCAGCAGCTGCTACAGGAGTGTGCCCACTGCAGCCGTGCCCTCCTGCAGGAGCGGCCTAGCACTGAGAGCATGCAGGCTGTTATCCTGGGGCTGACTGCCCGGCTCCACACCTCAGAGCCTGGGGCCAGCACACAGCCCCTCTGCAG
Seq A exon
GTATGGACTTATCTGGAGGGTCGTCAGGCCAGGGGTGTGTAAGTGGGTCCCCTGAGGAGGCTTGGGTCATAAAGTTAGCAAGAGCTCATGCAGGAGCAGGCGCGTTGCTCCTGTCCCAAGGTGGCTGGGAGGGGGTATGGGCGCTGCCCCTCCACCCCTTCCTCACACCATTCCTACTCCCAG
Seq C2 exon
GAAGCATGCGCTGCGGGTGCTGGACATGACGGGCCTCTTGGATGATGGTGTGGAACAGGATCCTGGCACCATGAGCATGTGGGACTGTACTGCTGCCGTAGCTCGCACATGCATTGCCCAGCAGCAGGGTGGGGCCGCAGAGCCTGGGCCAGCCCCCATCCCCGTGGAGGTGCGCGTGGACCTGCGGGTGAACCGGGCCTCCTATGCGTTCCTGCGGGAGGCACTCCGAAGCAGCGTGGGCAGCCCGCTGCGGCTCTGCTGCCGGGACCTGCGAGCTGAGGACCTGCCCATGCGCAACACTGTGGCCCTGCTGCAGCTTCTGGATGCAGGCTGCCTGCGCCGCGTGGACCTGCGCTTCAACAATCTGGGCCTGCGCGGCCTGTCTGTGATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCCAGCCTGCGGCTCCACTATGTGCATGGGGATTCAAGGCAGCCCTCCGTGGATGGCGAGGACAACTTCCGCTACTTCCTTGCCCAGATGGGCCGCTTCACCTGTCTGCGTGAGCTCAGCATGGGCTCCTCTCTCCTTTCAGGGAGGCTGGACCAGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160959:ENST00000292524:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGCGCGAGTTGGTACAC
R:
CACACCATCATCCAAGAGGCC
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development