RnoINT0086804 @ rn6
Intron Retention
Gene
ENSRNOG00000016128 | Lrrc14
Description
leucine rich repeat containing 14 [Source:RGD Symbol;Acc:1560202]
Coordinates
chr7:117777324-117778454:+
Coord C1 exon
chr7:117777324-117777677
Coord A exon
chr7:117777678-117777869
Coord C2 exon
chr7:117777870-117778454
Length
192 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CTGCCCATTCCTGCTCCCAGGAA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GGGCCTGTCTGCCCAGTCCAGCACCATGCACACGCTTGTGTTCCTCAGCACACGCCAGGTGCTTCAGTGCCAGCCAGCTGCCTGCCAGGCCTTGCCCCTGCTGCCCCGAGAACTCTTCCCTCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGCCGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTCCTCAGTTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAACGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGACTGACCGCCCGGATACATGCTCGAGAAGCAGAGGCTGGCACACAGCCCGTTTGCAG
Seq A exon
GTATGCATTTATCTGAGGGGCCCATAGGCTAGGGGCACAGCAGAGATTCTCTGAATTGGTTCTAGGCTGTGGTTCTGAGGTCAGAAAGAGCTCAGTATGGAATACTCCTGTCTGTTACTTCTGTACAAAGTAGCTGGGAGGGATGTAGGCCTTTCTCCCTCATTCCCTGCCTCTGCCCATTCCTGCTCCCAG
Seq C2 exon
GAAGCATACACTGCGGGTACTGGACATGACTGGCCTCCTGGATGATGGTGTGGAGCAGGATCCAGGAACCATGAGCATGTGGGACTGTACAGCGGCGGTAGCCAGAACTTGTATTGCCCAGCAGCAGGTCGGGACTGCTAAGCCAGGGCTGTCACCAGTCCCCGTGGAAATTCGTGTAGACCTTCGGGTAAACCGGGCCTCCTATACATTCCTTCGTGAGGCACTCCAGAGTAGTGTGGACAGCCTGCTGCGGCTCTGCTGCCGGGACCTCCGGGCTGAGGATCTGCCCATGCGTAACACTGTGGCCCTACTACAGCTTCTAGATGCAGGCTGTCTGCGCCGTATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAGCACCTAGCCAGCCTGAGGCTGCATTATGTGCATGGGGACTCCAGACAGCCCTCCGTGGATGGTGAGGACAACTTTCGCTACTTCCTGGCCCAGATGGGCCGGTTCATCTGTCTTCGGGAGCTCAGCATTGGCTCTTCTCTCCTCTCAGGCAGGCTGGATCAACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016128:ENSRNOT00000021673:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGTTTCCAGCAGCTG
R:
GCTGTACAGTCCCACATGCTC
Band lengths:
251-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]